Cargando…

The structure of the complex between the arsenite oxidase from Pseudorhizobium banfieldiae sp. strain NT-26 and its native electron acceptor cytochrome c (552)

The arsenite oxidase (AioAB) from Pseudorhizobium banfieldiae sp. strain NT-26 catalyzes the oxidation of arsenite to arsenate and transfers electrons to its cognate electron acceptor cytochrome c (552) (cytc (552)). This activity underpins the ability of this organism to respire using arsenite pres...

Descripción completa

Detalles Bibliográficos
Autores principales: Poddar, Nilakhi, Santini, Joanne M., Maher, Megan J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: International Union of Crystallography 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10071563/
https://www.ncbi.nlm.nih.gov/pubmed/36995233
http://dx.doi.org/10.1107/S2059798323002103
_version_ 1785019223216488448
author Poddar, Nilakhi
Santini, Joanne M.
Maher, Megan J.
author_facet Poddar, Nilakhi
Santini, Joanne M.
Maher, Megan J.
author_sort Poddar, Nilakhi
collection PubMed
description The arsenite oxidase (AioAB) from Pseudorhizobium banfieldiae sp. strain NT-26 catalyzes the oxidation of arsenite to arsenate and transfers electrons to its cognate electron acceptor cytochrome c (552) (cytc (552)). This activity underpins the ability of this organism to respire using arsenite present in contaminated environments. The crystal structure of the AioAB/cytc (552) electron transfer complex reveals two A(2)B(2)/(cytc (552))(2) assemblies per asymmetric unit. Three of the four cytc (552) molecules in the asymmetric unit dock to AioAB in a cleft at the interface between the AioA and AioB subunits, with an edge-to-edge distance of 7.5 Å between the heme of cytc (552) and the [2Fe–2S] Rieske cluster in the AioB subunit. The interface between the AioAB and cytc (552) proteins features electrostatic and nonpolar interactions and is stabilized by two salt bridges. A modest number of hydrogen bonds, salt bridges and relatively small, buried surface areas between protein partners are typical features of transient electron transfer complexes. Interestingly, the fourth cytc (552) molecule is positioned differently between two AioAB heterodimers, with distances between its heme and the AioAB redox active cofactors that are outside the acceptable range for fast electron transfer. This unique cytc (552) molecule appears to be positioned to facilitate crystal packing rather than reflecting a functional complex.
format Online
Article
Text
id pubmed-10071563
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher International Union of Crystallography
record_format MEDLINE/PubMed
spelling pubmed-100715632023-04-05 The structure of the complex between the arsenite oxidase from Pseudorhizobium banfieldiae sp. strain NT-26 and its native electron acceptor cytochrome c (552) Poddar, Nilakhi Santini, Joanne M. Maher, Megan J. Acta Crystallogr D Struct Biol Research Papers The arsenite oxidase (AioAB) from Pseudorhizobium banfieldiae sp. strain NT-26 catalyzes the oxidation of arsenite to arsenate and transfers electrons to its cognate electron acceptor cytochrome c (552) (cytc (552)). This activity underpins the ability of this organism to respire using arsenite present in contaminated environments. The crystal structure of the AioAB/cytc (552) electron transfer complex reveals two A(2)B(2)/(cytc (552))(2) assemblies per asymmetric unit. Three of the four cytc (552) molecules in the asymmetric unit dock to AioAB in a cleft at the interface between the AioA and AioB subunits, with an edge-to-edge distance of 7.5 Å between the heme of cytc (552) and the [2Fe–2S] Rieske cluster in the AioB subunit. The interface between the AioAB and cytc (552) proteins features electrostatic and nonpolar interactions and is stabilized by two salt bridges. A modest number of hydrogen bonds, salt bridges and relatively small, buried surface areas between protein partners are typical features of transient electron transfer complexes. Interestingly, the fourth cytc (552) molecule is positioned differently between two AioAB heterodimers, with distances between its heme and the AioAB redox active cofactors that are outside the acceptable range for fast electron transfer. This unique cytc (552) molecule appears to be positioned to facilitate crystal packing rather than reflecting a functional complex. International Union of Crystallography 2023-03-30 /pmc/articles/PMC10071563/ /pubmed/36995233 http://dx.doi.org/10.1107/S2059798323002103 Text en © Nilakhi Poddar et al. 2023 https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
spellingShingle Research Papers
Poddar, Nilakhi
Santini, Joanne M.
Maher, Megan J.
The structure of the complex between the arsenite oxidase from Pseudorhizobium banfieldiae sp. strain NT-26 and its native electron acceptor cytochrome c (552)
title The structure of the complex between the arsenite oxidase from Pseudorhizobium banfieldiae sp. strain NT-26 and its native electron acceptor cytochrome c (552)
title_full The structure of the complex between the arsenite oxidase from Pseudorhizobium banfieldiae sp. strain NT-26 and its native electron acceptor cytochrome c (552)
title_fullStr The structure of the complex between the arsenite oxidase from Pseudorhizobium banfieldiae sp. strain NT-26 and its native electron acceptor cytochrome c (552)
title_full_unstemmed The structure of the complex between the arsenite oxidase from Pseudorhizobium banfieldiae sp. strain NT-26 and its native electron acceptor cytochrome c (552)
title_short The structure of the complex between the arsenite oxidase from Pseudorhizobium banfieldiae sp. strain NT-26 and its native electron acceptor cytochrome c (552)
title_sort structure of the complex between the arsenite oxidase from pseudorhizobium banfieldiae sp. strain nt-26 and its native electron acceptor cytochrome c (552)
topic Research Papers
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10071563/
https://www.ncbi.nlm.nih.gov/pubmed/36995233
http://dx.doi.org/10.1107/S2059798323002103
work_keys_str_mv AT poddarnilakhi thestructureofthecomplexbetweenthearseniteoxidasefrompseudorhizobiumbanfieldiaespstrainnt26anditsnativeelectronacceptorcytochromec552
AT santinijoannem thestructureofthecomplexbetweenthearseniteoxidasefrompseudorhizobiumbanfieldiaespstrainnt26anditsnativeelectronacceptorcytochromec552
AT mahermeganj thestructureofthecomplexbetweenthearseniteoxidasefrompseudorhizobiumbanfieldiaespstrainnt26anditsnativeelectronacceptorcytochromec552
AT poddarnilakhi structureofthecomplexbetweenthearseniteoxidasefrompseudorhizobiumbanfieldiaespstrainnt26anditsnativeelectronacceptorcytochromec552
AT santinijoannem structureofthecomplexbetweenthearseniteoxidasefrompseudorhizobiumbanfieldiaespstrainnt26anditsnativeelectronacceptorcytochromec552
AT mahermeganj structureofthecomplexbetweenthearseniteoxidasefrompseudorhizobiumbanfieldiaespstrainnt26anditsnativeelectronacceptorcytochromec552