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Publication bias impacts on effect size, statistical power, and magnitude (Type M) and sign (Type S) errors in ecology and evolutionary biology

Collaborative efforts to directly replicate empirical studies in the medical and social sciences have revealed alarmingly low rates of replicability, a phenomenon dubbed the ‘replication crisis’. Poor replicability has spurred cultural changes targeted at improving reliability in these disciplines....

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Autores principales: Yang, Yefeng, Sánchez-Tójar, Alfredo, O’Dea, Rose E., Noble, Daniel W. A., Koricheva, Julia, Jennions, Michael D., Parker, Timothy H., Lagisz, Malgorzata, Nakagawa, Shinichi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10071700/
https://www.ncbi.nlm.nih.gov/pubmed/37013585
http://dx.doi.org/10.1186/s12915-022-01485-y
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author Yang, Yefeng
Sánchez-Tójar, Alfredo
O’Dea, Rose E.
Noble, Daniel W. A.
Koricheva, Julia
Jennions, Michael D.
Parker, Timothy H.
Lagisz, Malgorzata
Nakagawa, Shinichi
author_facet Yang, Yefeng
Sánchez-Tójar, Alfredo
O’Dea, Rose E.
Noble, Daniel W. A.
Koricheva, Julia
Jennions, Michael D.
Parker, Timothy H.
Lagisz, Malgorzata
Nakagawa, Shinichi
author_sort Yang, Yefeng
collection PubMed
description Collaborative efforts to directly replicate empirical studies in the medical and social sciences have revealed alarmingly low rates of replicability, a phenomenon dubbed the ‘replication crisis’. Poor replicability has spurred cultural changes targeted at improving reliability in these disciplines. Given the absence of equivalent replication projects in ecology and evolutionary biology, two inter-related indicators offer the opportunity to retrospectively assess replicability: publication bias and statistical power. This registered report assesses the prevalence and severity of small-study (i.e., smaller studies reporting larger effect sizes) and decline effects (i.e., effect sizes decreasing over time) across ecology and evolutionary biology using 87 meta-analyses comprising 4,250 primary studies and 17,638 effect sizes. Further, we estimate how publication bias might distort the estimation of effect sizes, statistical power, and errors in magnitude (Type M or exaggeration ratio) and sign (Type S). We show strong evidence for the pervasiveness of both small-study and decline effects in ecology and evolution. There was widespread prevalence of publication bias that resulted in meta-analytic means being over-estimated by (at least) 0.12 standard deviations. The prevalence of publication bias distorted confidence in meta-analytic results, with 66% of initially statistically significant meta-analytic means becoming non-significant after correcting for publication bias. Ecological and evolutionary studies consistently had low statistical power (15%) with a 4-fold exaggeration of effects on average (Type M error rates = 4.4). Notably, publication bias reduced power from 23% to 15% and increased type M error rates from 2.7 to 4.4 because it creates a non-random sample of effect size evidence. The sign errors of effect sizes (Type S error) increased from 5% to 8% because of publication bias. Our research provides clear evidence that many published ecological and evolutionary findings are inflated. Our results highlight the importance of designing high-power empirical studies (e.g., via collaborative team science), promoting and encouraging replication studies, testing and correcting for publication bias in meta-analyses, and adopting open and transparent research practices, such as (pre)registration, data- and code-sharing, and transparent reporting. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12915-022-01485-y.
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spelling pubmed-100717002023-04-05 Publication bias impacts on effect size, statistical power, and magnitude (Type M) and sign (Type S) errors in ecology and evolutionary biology Yang, Yefeng Sánchez-Tójar, Alfredo O’Dea, Rose E. Noble, Daniel W. A. Koricheva, Julia Jennions, Michael D. Parker, Timothy H. Lagisz, Malgorzata Nakagawa, Shinichi BMC Biol Registered Report Collaborative efforts to directly replicate empirical studies in the medical and social sciences have revealed alarmingly low rates of replicability, a phenomenon dubbed the ‘replication crisis’. Poor replicability has spurred cultural changes targeted at improving reliability in these disciplines. Given the absence of equivalent replication projects in ecology and evolutionary biology, two inter-related indicators offer the opportunity to retrospectively assess replicability: publication bias and statistical power. This registered report assesses the prevalence and severity of small-study (i.e., smaller studies reporting larger effect sizes) and decline effects (i.e., effect sizes decreasing over time) across ecology and evolutionary biology using 87 meta-analyses comprising 4,250 primary studies and 17,638 effect sizes. Further, we estimate how publication bias might distort the estimation of effect sizes, statistical power, and errors in magnitude (Type M or exaggeration ratio) and sign (Type S). We show strong evidence for the pervasiveness of both small-study and decline effects in ecology and evolution. There was widespread prevalence of publication bias that resulted in meta-analytic means being over-estimated by (at least) 0.12 standard deviations. The prevalence of publication bias distorted confidence in meta-analytic results, with 66% of initially statistically significant meta-analytic means becoming non-significant after correcting for publication bias. Ecological and evolutionary studies consistently had low statistical power (15%) with a 4-fold exaggeration of effects on average (Type M error rates = 4.4). Notably, publication bias reduced power from 23% to 15% and increased type M error rates from 2.7 to 4.4 because it creates a non-random sample of effect size evidence. The sign errors of effect sizes (Type S error) increased from 5% to 8% because of publication bias. Our research provides clear evidence that many published ecological and evolutionary findings are inflated. Our results highlight the importance of designing high-power empirical studies (e.g., via collaborative team science), promoting and encouraging replication studies, testing and correcting for publication bias in meta-analyses, and adopting open and transparent research practices, such as (pre)registration, data- and code-sharing, and transparent reporting. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12915-022-01485-y. BioMed Central 2023-04-03 /pmc/articles/PMC10071700/ /pubmed/37013585 http://dx.doi.org/10.1186/s12915-022-01485-y Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Registered Report
Yang, Yefeng
Sánchez-Tójar, Alfredo
O’Dea, Rose E.
Noble, Daniel W. A.
Koricheva, Julia
Jennions, Michael D.
Parker, Timothy H.
Lagisz, Malgorzata
Nakagawa, Shinichi
Publication bias impacts on effect size, statistical power, and magnitude (Type M) and sign (Type S) errors in ecology and evolutionary biology
title Publication bias impacts on effect size, statistical power, and magnitude (Type M) and sign (Type S) errors in ecology and evolutionary biology
title_full Publication bias impacts on effect size, statistical power, and magnitude (Type M) and sign (Type S) errors in ecology and evolutionary biology
title_fullStr Publication bias impacts on effect size, statistical power, and magnitude (Type M) and sign (Type S) errors in ecology and evolutionary biology
title_full_unstemmed Publication bias impacts on effect size, statistical power, and magnitude (Type M) and sign (Type S) errors in ecology and evolutionary biology
title_short Publication bias impacts on effect size, statistical power, and magnitude (Type M) and sign (Type S) errors in ecology and evolutionary biology
title_sort publication bias impacts on effect size, statistical power, and magnitude (type m) and sign (type s) errors in ecology and evolutionary biology
topic Registered Report
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10071700/
https://www.ncbi.nlm.nih.gov/pubmed/37013585
http://dx.doi.org/10.1186/s12915-022-01485-y
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