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Clarifying the structures of imidines: using crystallographic characterization to identify tautomers and localized systems of π-bonding
Nitrogen heterocycles are a class of organic compounds with extremely versatile functionality. Imidines, HN[C(NH)R](2), are a rare class of heterocycles related to imides, HN[C(O)R](2), in which the O atoms of the carbonyl groups are replaced by N—H groups. The useful synthesis of the imidine com...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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International Union of Crystallography
2023
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10074040/ https://www.ncbi.nlm.nih.gov/pubmed/36919971 http://dx.doi.org/10.1107/S2053229623002036 |
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author | Aristov, Michael M. Geng, Han Harris, James W. Berry, John F. |
author_facet | Aristov, Michael M. Geng, Han Harris, James W. Berry, John F. |
author_sort | Aristov, Michael M. |
collection | PubMed |
description | Nitrogen heterocycles are a class of organic compounds with extremely versatile functionality. Imidines, HN[C(NH)R](2), are a rare class of heterocycles related to imides, HN[C(O)R](2), in which the O atoms of the carbonyl groups are replaced by N—H groups. The useful synthesis of the imidine compounds succinimidine and glutarimidine, as well as their partially hydrolyzed imino–imide congeners, was first described in the mid-1950s, though structural characterization is presented for the first time in this article. In the solid state, these structures are different from the proposed imidine form: succinimidine crystallizes as an imino–amine, 2-imino-3,4-dihydro-2H-pyrrol-5-amine, C(4)H(7)N(2) (1), glutarimidine as 6-imino-3,4,5,6-tetrahydropyridin-2-amine methanol monosolvate, C(5)H(9)N(3)·CH(3)OH (2), and the corresponding hydrolyzed imino–imide compounds as amino–amides 5-amino-3,4-dihydro-2H-pyrrol-2-one, C(4)H(6)N(2)O (3), and 6-amino-4,5-dihydropyridin-2(3H)-one, C(5)H(8)N(2)O (4). Imidine 1 was also determined as the hydrochloride salt solvate 5-amino-3,4-dihydro-2H-pyrrol-2-iminium chloride–2-imino-3,4-dihydro-2H-pyrrol-5-amine–water (1/1/1), C(4)H(8)N(3) (+)·Cl(−)·C(4)H(7)N(3)·H(2)O (1·HCl). As such, 1 and 2 show alternating short and long C—N bonds across the molecule, revealing distinct imino (C=NH) and amine (C—NH(2)) groups throughout the C—N backbone. These structures provide definitive evidence for the predominant imino–amine tautomer in the solid state, which serves to enrich the previously proposed imidine-focused structures that have appeared in organic chemistry textbooks since the discovery of this class of compounds in 1883. |
format | Online Article Text |
id | pubmed-10074040 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | International Union of Crystallography |
record_format | MEDLINE/PubMed |
spelling | pubmed-100740402023-04-06 Clarifying the structures of imidines: using crystallographic characterization to identify tautomers and localized systems of π-bonding Aristov, Michael M. Geng, Han Harris, James W. Berry, John F. Acta Crystallogr C Struct Chem Research Papers Nitrogen heterocycles are a class of organic compounds with extremely versatile functionality. Imidines, HN[C(NH)R](2), are a rare class of heterocycles related to imides, HN[C(O)R](2), in which the O atoms of the carbonyl groups are replaced by N—H groups. The useful synthesis of the imidine compounds succinimidine and glutarimidine, as well as their partially hydrolyzed imino–imide congeners, was first described in the mid-1950s, though structural characterization is presented for the first time in this article. In the solid state, these structures are different from the proposed imidine form: succinimidine crystallizes as an imino–amine, 2-imino-3,4-dihydro-2H-pyrrol-5-amine, C(4)H(7)N(2) (1), glutarimidine as 6-imino-3,4,5,6-tetrahydropyridin-2-amine methanol monosolvate, C(5)H(9)N(3)·CH(3)OH (2), and the corresponding hydrolyzed imino–imide compounds as amino–amides 5-amino-3,4-dihydro-2H-pyrrol-2-one, C(4)H(6)N(2)O (3), and 6-amino-4,5-dihydropyridin-2(3H)-one, C(5)H(8)N(2)O (4). Imidine 1 was also determined as the hydrochloride salt solvate 5-amino-3,4-dihydro-2H-pyrrol-2-iminium chloride–2-imino-3,4-dihydro-2H-pyrrol-5-amine–water (1/1/1), C(4)H(8)N(3) (+)·Cl(−)·C(4)H(7)N(3)·H(2)O (1·HCl). As such, 1 and 2 show alternating short and long C—N bonds across the molecule, revealing distinct imino (C=NH) and amine (C—NH(2)) groups throughout the C—N backbone. These structures provide definitive evidence for the predominant imino–amine tautomer in the solid state, which serves to enrich the previously proposed imidine-focused structures that have appeared in organic chemistry textbooks since the discovery of this class of compounds in 1883. International Union of Crystallography 2023-03-15 /pmc/articles/PMC10074040/ /pubmed/36919971 http://dx.doi.org/10.1107/S2053229623002036 Text en © Aristov et al. 2023 https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited. |
spellingShingle | Research Papers Aristov, Michael M. Geng, Han Harris, James W. Berry, John F. Clarifying the structures of imidines: using crystallographic characterization to identify tautomers and localized systems of π-bonding |
title | Clarifying the structures of imidines: using crystallographic characterization to identify tautomers and localized systems of π-bonding |
title_full | Clarifying the structures of imidines: using crystallographic characterization to identify tautomers and localized systems of π-bonding |
title_fullStr | Clarifying the structures of imidines: using crystallographic characterization to identify tautomers and localized systems of π-bonding |
title_full_unstemmed | Clarifying the structures of imidines: using crystallographic characterization to identify tautomers and localized systems of π-bonding |
title_short | Clarifying the structures of imidines: using crystallographic characterization to identify tautomers and localized systems of π-bonding |
title_sort | clarifying the structures of imidines: using crystallographic characterization to identify tautomers and localized systems of π-bonding |
topic | Research Papers |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10074040/ https://www.ncbi.nlm.nih.gov/pubmed/36919971 http://dx.doi.org/10.1107/S2053229623002036 |
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