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Clarifying the structures of imidines: using crystallographic characterization to identify tautomers and localized systems of π-bonding

Nitro­gen heterocycles are a class of organic com­pounds with extremely versatile functionality. Imidines, HN[C(NH)R](2), are a rare class of heterocycles related to imides, HN[C(O)R](2), in which the O atoms of the carbonyl groups are replaced by N—H groups. The useful synthesis of the imidine com­...

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Autores principales: Aristov, Michael M., Geng, Han, Harris, James W., Berry, John F.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: International Union of Crystallography 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10074040/
https://www.ncbi.nlm.nih.gov/pubmed/36919971
http://dx.doi.org/10.1107/S2053229623002036
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author Aristov, Michael M.
Geng, Han
Harris, James W.
Berry, John F.
author_facet Aristov, Michael M.
Geng, Han
Harris, James W.
Berry, John F.
author_sort Aristov, Michael M.
collection PubMed
description Nitro­gen heterocycles are a class of organic com­pounds with extremely versatile functionality. Imidines, HN[C(NH)R](2), are a rare class of heterocycles related to imides, HN[C(O)R](2), in which the O atoms of the carbonyl groups are replaced by N—H groups. The useful synthesis of the imidine com­pounds succinimidine and glutarimidine, as well as their partially hydrolyzed imino–imide congeners, was first described in the mid-1950s, though structural characterization is pre­sented for the first time in this article. In the solid state, these structures are dif­ferent from the proposed imidine form: succinimidine crystallizes as an imino–amine, 2-imino-3,4-di­hydro-2H-pyrrol-5-amine, C(4)H(7)N(2) (1), glutarimi­dine as 6-imino-3,4,5,6-tetra­hydro­pyridin-2-amine methanol monosolvate, C(5)H(9)N(3)·CH(3)OH (2), and the corresponding hydrolyzed imino–imide com­pounds as amino–amides 5-amino-3,4-di­hydro-2H-pyrrol-2-one, C(4)H(6)N(2)O (3), and 6-amino-4,5-di­hydro­pyridin-2(3H)-one, C(5)H(8)N(2)O (4). Imidine 1 was also determined as the hydro­chloride salt solvate 5-amino-3,4-di­hydro-2H-pyrrol-2-iminium chloride–2-imino-3,4-di­hydro-2H-pyrrol-5-amine–water (1/1/1), C(4)H(8)N(3) (+)·Cl(−)·C(4)H(7)N(3)·H(2)O (1·HCl). As such, 1 and 2 show alternating short and long C—N bonds across the mol­ecule, revealing distinct imino (C=NH) and amine (C—NH(2)) groups throughout the C—N backbone. These structures provide definitive evidence for the predominant imino–amine tautomer in the solid state, which serves to enrich the previously proposed imidine-focused structures that have appeared in organic chemistry textbooks since the discovery of this class of com­pounds in 1883.
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spelling pubmed-100740402023-04-06 Clarifying the structures of imidines: using crystallographic characterization to identify tautomers and localized systems of π-bonding Aristov, Michael M. Geng, Han Harris, James W. Berry, John F. Acta Crystallogr C Struct Chem Research Papers Nitro­gen heterocycles are a class of organic com­pounds with extremely versatile functionality. Imidines, HN[C(NH)R](2), are a rare class of heterocycles related to imides, HN[C(O)R](2), in which the O atoms of the carbonyl groups are replaced by N—H groups. The useful synthesis of the imidine com­pounds succinimidine and glutarimidine, as well as their partially hydrolyzed imino–imide congeners, was first described in the mid-1950s, though structural characterization is pre­sented for the first time in this article. In the solid state, these structures are dif­ferent from the proposed imidine form: succinimidine crystallizes as an imino–amine, 2-imino-3,4-di­hydro-2H-pyrrol-5-amine, C(4)H(7)N(2) (1), glutarimi­dine as 6-imino-3,4,5,6-tetra­hydro­pyridin-2-amine methanol monosolvate, C(5)H(9)N(3)·CH(3)OH (2), and the corresponding hydrolyzed imino–imide com­pounds as amino–amides 5-amino-3,4-di­hydro-2H-pyrrol-2-one, C(4)H(6)N(2)O (3), and 6-amino-4,5-di­hydro­pyridin-2(3H)-one, C(5)H(8)N(2)O (4). Imidine 1 was also determined as the hydro­chloride salt solvate 5-amino-3,4-di­hydro-2H-pyrrol-2-iminium chloride–2-imino-3,4-di­hydro-2H-pyrrol-5-amine–water (1/1/1), C(4)H(8)N(3) (+)·Cl(−)·C(4)H(7)N(3)·H(2)O (1·HCl). As such, 1 and 2 show alternating short and long C—N bonds across the mol­ecule, revealing distinct imino (C=NH) and amine (C—NH(2)) groups throughout the C—N backbone. These structures provide definitive evidence for the predominant imino–amine tautomer in the solid state, which serves to enrich the previously proposed imidine-focused structures that have appeared in organic chemistry textbooks since the discovery of this class of com­pounds in 1883. International Union of Crystallography 2023-03-15 /pmc/articles/PMC10074040/ /pubmed/36919971 http://dx.doi.org/10.1107/S2053229623002036 Text en © Aristov et al. 2023 https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
spellingShingle Research Papers
Aristov, Michael M.
Geng, Han
Harris, James W.
Berry, John F.
Clarifying the structures of imidines: using crystallographic characterization to identify tautomers and localized systems of π-bonding
title Clarifying the structures of imidines: using crystallographic characterization to identify tautomers and localized systems of π-bonding
title_full Clarifying the structures of imidines: using crystallographic characterization to identify tautomers and localized systems of π-bonding
title_fullStr Clarifying the structures of imidines: using crystallographic characterization to identify tautomers and localized systems of π-bonding
title_full_unstemmed Clarifying the structures of imidines: using crystallographic characterization to identify tautomers and localized systems of π-bonding
title_short Clarifying the structures of imidines: using crystallographic characterization to identify tautomers and localized systems of π-bonding
title_sort clarifying the structures of imidines: using crystallographic characterization to identify tautomers and localized systems of π-bonding
topic Research Papers
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10074040/
https://www.ncbi.nlm.nih.gov/pubmed/36919971
http://dx.doi.org/10.1107/S2053229623002036
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