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Mobile and Self‐Sustained Data Storage in an Extremophile Genomic DNA

DNA has been pursued as a novel biomaterial for digital data storage. While large‐scale data storage and random access have been achieved in DNA oligonucleotide pools, repeated data accessing requires constant data replenishment, and these implementations are confined in professional facilities. Her...

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Autores principales: Sun, Fajia, Dong, Yiming, Ni, Ming, Ping, Zhi, Sun, Yuhui, Ouyang, Qi, Qian, Long
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10074078/
https://www.ncbi.nlm.nih.gov/pubmed/36737843
http://dx.doi.org/10.1002/advs.202206201
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author Sun, Fajia
Dong, Yiming
Ni, Ming
Ping, Zhi
Sun, Yuhui
Ouyang, Qi
Qian, Long
author_facet Sun, Fajia
Dong, Yiming
Ni, Ming
Ping, Zhi
Sun, Yuhui
Ouyang, Qi
Qian, Long
author_sort Sun, Fajia
collection PubMed
description DNA has been pursued as a novel biomaterial for digital data storage. While large‐scale data storage and random access have been achieved in DNA oligonucleotide pools, repeated data accessing requires constant data replenishment, and these implementations are confined in professional facilities. Here, a mobile data storage system in the genome of the extremophile Halomonas bluephagenesis, which enables dual‐mode storage, dynamic data maintenance, rapid readout, and robust recovery. The system relies on two key components: A versatile genetic toolbox for the integration of 10–100 kb scale synthetic DNA into H. bluephagenesis genome and an efficient error correction coding scheme targeting noisy nanopore sequencing reads. The storage and repeated retrieval of 5 KB data under non‐laboratory conditions are demonstrated. The work highlights the potential of DNA data storage in domestic and field scenarios, and expands its application domain from archival data to frequently accessed data.
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spelling pubmed-100740782023-04-06 Mobile and Self‐Sustained Data Storage in an Extremophile Genomic DNA Sun, Fajia Dong, Yiming Ni, Ming Ping, Zhi Sun, Yuhui Ouyang, Qi Qian, Long Adv Sci (Weinh) Research Articles DNA has been pursued as a novel biomaterial for digital data storage. While large‐scale data storage and random access have been achieved in DNA oligonucleotide pools, repeated data accessing requires constant data replenishment, and these implementations are confined in professional facilities. Here, a mobile data storage system in the genome of the extremophile Halomonas bluephagenesis, which enables dual‐mode storage, dynamic data maintenance, rapid readout, and robust recovery. The system relies on two key components: A versatile genetic toolbox for the integration of 10–100 kb scale synthetic DNA into H. bluephagenesis genome and an efficient error correction coding scheme targeting noisy nanopore sequencing reads. The storage and repeated retrieval of 5 KB data under non‐laboratory conditions are demonstrated. The work highlights the potential of DNA data storage in domestic and field scenarios, and expands its application domain from archival data to frequently accessed data. John Wiley and Sons Inc. 2023-02-03 /pmc/articles/PMC10074078/ /pubmed/36737843 http://dx.doi.org/10.1002/advs.202206201 Text en © 2023 The Authors. Advanced Science published by Wiley‐VCH GmbH https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Articles
Sun, Fajia
Dong, Yiming
Ni, Ming
Ping, Zhi
Sun, Yuhui
Ouyang, Qi
Qian, Long
Mobile and Self‐Sustained Data Storage in an Extremophile Genomic DNA
title Mobile and Self‐Sustained Data Storage in an Extremophile Genomic DNA
title_full Mobile and Self‐Sustained Data Storage in an Extremophile Genomic DNA
title_fullStr Mobile and Self‐Sustained Data Storage in an Extremophile Genomic DNA
title_full_unstemmed Mobile and Self‐Sustained Data Storage in an Extremophile Genomic DNA
title_short Mobile and Self‐Sustained Data Storage in an Extremophile Genomic DNA
title_sort mobile and self‐sustained data storage in an extremophile genomic dna
topic Research Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10074078/
https://www.ncbi.nlm.nih.gov/pubmed/36737843
http://dx.doi.org/10.1002/advs.202206201
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