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Spatial cumulant models enable spatially informed treatment strategies and analysis of local interactions in cancer systems

Theoretical and applied cancer studies that use individual-based models (IBMs) have been limited by the lack of a mathematical formulation that enables rigorous analysis of these models. However, spatial cumulant models (SCMs), which have arisen from theoretical ecology, describe population dynamics...

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Autores principales: Hamis, Sara, Somervuo, Panu, Ågren, J. Arvid, Tadele, Dagim Shiferaw, Kesseli, Juha, Scott, Jacob G., Nykter, Matti, Gerlee, Philip, Finkelshtein, Dmitri, Ovaskainen, Otso
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer Berlin Heidelberg 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10076412/
https://www.ncbi.nlm.nih.gov/pubmed/37017776
http://dx.doi.org/10.1007/s00285-023-01903-x
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author Hamis, Sara
Somervuo, Panu
Ågren, J. Arvid
Tadele, Dagim Shiferaw
Kesseli, Juha
Scott, Jacob G.
Nykter, Matti
Gerlee, Philip
Finkelshtein, Dmitri
Ovaskainen, Otso
author_facet Hamis, Sara
Somervuo, Panu
Ågren, J. Arvid
Tadele, Dagim Shiferaw
Kesseli, Juha
Scott, Jacob G.
Nykter, Matti
Gerlee, Philip
Finkelshtein, Dmitri
Ovaskainen, Otso
author_sort Hamis, Sara
collection PubMed
description Theoretical and applied cancer studies that use individual-based models (IBMs) have been limited by the lack of a mathematical formulation that enables rigorous analysis of these models. However, spatial cumulant models (SCMs), which have arisen from theoretical ecology, describe population dynamics generated by a specific family of IBMs, namely spatio-temporal point processes (STPPs). SCMs are spatially resolved population models formulated by a system of differential equations that approximate the dynamics of two STPP-generated summary statistics: first-order spatial cumulants (densities), and second-order spatial cumulants (spatial covariances). We exemplify how SCMs can be used in mathematical oncology by modelling theoretical cancer cell populations comprising interacting growth factor-producing and non-producing cells. To formulate model equations, we use computational tools that enable the generation of STPPs, SCMs and mean-field population models (MFPMs) from user-defined model descriptions (Cornell et al. Nat Commun 10:4716, 2019). To calculate and compare STPP, SCM and MFPM-generated summary statistics, we develop an application-agnostic computational pipeline. Our results demonstrate that SCMs can capture STPP-generated population density dynamics, even when MFPMs fail to do so. From both MFPM and SCM equations, we derive treatment-induced death rates required to achieve non-growing cell populations. When testing these treatment strategies in STPP-generated cell populations, our results demonstrate that SCM-informed strategies outperform MFPM-informed strategies in terms of inhibiting population growths. We thus demonstrate that SCMs provide a new framework in which to study cell-cell interactions, and can be used to describe and perturb STPP-generated cell population dynamics. We, therefore, argue that SCMs can be used to increase IBMs’ applicability in cancer research. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s00285-023-01903-x.
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spelling pubmed-100764122023-04-07 Spatial cumulant models enable spatially informed treatment strategies and analysis of local interactions in cancer systems Hamis, Sara Somervuo, Panu Ågren, J. Arvid Tadele, Dagim Shiferaw Kesseli, Juha Scott, Jacob G. Nykter, Matti Gerlee, Philip Finkelshtein, Dmitri Ovaskainen, Otso J Math Biol Article Theoretical and applied cancer studies that use individual-based models (IBMs) have been limited by the lack of a mathematical formulation that enables rigorous analysis of these models. However, spatial cumulant models (SCMs), which have arisen from theoretical ecology, describe population dynamics generated by a specific family of IBMs, namely spatio-temporal point processes (STPPs). SCMs are spatially resolved population models formulated by a system of differential equations that approximate the dynamics of two STPP-generated summary statistics: first-order spatial cumulants (densities), and second-order spatial cumulants (spatial covariances). We exemplify how SCMs can be used in mathematical oncology by modelling theoretical cancer cell populations comprising interacting growth factor-producing and non-producing cells. To formulate model equations, we use computational tools that enable the generation of STPPs, SCMs and mean-field population models (MFPMs) from user-defined model descriptions (Cornell et al. Nat Commun 10:4716, 2019). To calculate and compare STPP, SCM and MFPM-generated summary statistics, we develop an application-agnostic computational pipeline. Our results demonstrate that SCMs can capture STPP-generated population density dynamics, even when MFPMs fail to do so. From both MFPM and SCM equations, we derive treatment-induced death rates required to achieve non-growing cell populations. When testing these treatment strategies in STPP-generated cell populations, our results demonstrate that SCM-informed strategies outperform MFPM-informed strategies in terms of inhibiting population growths. We thus demonstrate that SCMs provide a new framework in which to study cell-cell interactions, and can be used to describe and perturb STPP-generated cell population dynamics. We, therefore, argue that SCMs can be used to increase IBMs’ applicability in cancer research. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s00285-023-01903-x. Springer Berlin Heidelberg 2023-04-05 2023 /pmc/articles/PMC10076412/ /pubmed/37017776 http://dx.doi.org/10.1007/s00285-023-01903-x Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Hamis, Sara
Somervuo, Panu
Ågren, J. Arvid
Tadele, Dagim Shiferaw
Kesseli, Juha
Scott, Jacob G.
Nykter, Matti
Gerlee, Philip
Finkelshtein, Dmitri
Ovaskainen, Otso
Spatial cumulant models enable spatially informed treatment strategies and analysis of local interactions in cancer systems
title Spatial cumulant models enable spatially informed treatment strategies and analysis of local interactions in cancer systems
title_full Spatial cumulant models enable spatially informed treatment strategies and analysis of local interactions in cancer systems
title_fullStr Spatial cumulant models enable spatially informed treatment strategies and analysis of local interactions in cancer systems
title_full_unstemmed Spatial cumulant models enable spatially informed treatment strategies and analysis of local interactions in cancer systems
title_short Spatial cumulant models enable spatially informed treatment strategies and analysis of local interactions in cancer systems
title_sort spatial cumulant models enable spatially informed treatment strategies and analysis of local interactions in cancer systems
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10076412/
https://www.ncbi.nlm.nih.gov/pubmed/37017776
http://dx.doi.org/10.1007/s00285-023-01903-x
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