Translating desktop success to the web in the cytoscape project

Cytoscape is an open-source bioinformatics environment for the analysis, integration, visualization, and query of biological networks. In this perspective piece, we describe our project to bring the Cytoscape desktop application to the web while explaining our strategy in ways relevant to others in...

Descripción completa

Detalles Bibliográficos
Autores principales: Pratt, Dexter, Pillich, Rudolf T., Morris, John H.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2023
Materias:
Bioinformatics
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10076771/
https://www.ncbi.nlm.nih.gov/pubmed/37035036
http://dx.doi.org/10.3389/fbinf.2023.1125949
_version_ 1785020207560916992
author Pratt, Dexter
Pillich, Rudolf T.
Morris, John H.
author_facet Pratt, Dexter
Pillich, Rudolf T.
Morris, John H.
author_sort Pratt, Dexter
collection PubMed
description Cytoscape is an open-source bioinformatics environment for the analysis, integration, visualization, and query of biological networks. In this perspective piece, we describe our project to bring the Cytoscape desktop application to the web while explaining our strategy in ways relevant to others in the bioinformatics community. We examine opportunities and challenges in developing bioinformatics software that spans both the desktop and web, and we describe our ongoing efforts to build a Cytoscape web application, highlighting the principles that guide our development.
format Online
Article
Text
id pubmed-10076771
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher Frontiers Media S.A.
record_format MEDLINE/PubMed
spelling pubmed-100767712023-04-07 Translating desktop success to the web in the cytoscape project Pratt, Dexter Pillich, Rudolf T. Morris, John H. Front Bioinform Bioinformatics Cytoscape is an open-source bioinformatics environment for the analysis, integration, visualization, and query of biological networks. In this perspective piece, we describe our project to bring the Cytoscape desktop application to the web while explaining our strategy in ways relevant to others in the bioinformatics community. We examine opportunities and challenges in developing bioinformatics software that spans both the desktop and web, and we describe our ongoing efforts to build a Cytoscape web application, highlighting the principles that guide our development. Frontiers Media S.A. 2023-03-23 /pmc/articles/PMC10076771/ /pubmed/37035036 http://dx.doi.org/10.3389/fbinf.2023.1125949 Text en Copyright © 2023 Pratt, Pillich and Morris. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Bioinformatics
Pratt, Dexter
Pillich, Rudolf T.
Morris, John H.
Translating desktop success to the web in the cytoscape project
title Translating desktop success to the web in the cytoscape project
title_full Translating desktop success to the web in the cytoscape project
title_fullStr Translating desktop success to the web in the cytoscape project
title_full_unstemmed Translating desktop success to the web in the cytoscape project
title_short Translating desktop success to the web in the cytoscape project
title_sort translating desktop success to the web in the cytoscape project
topic Bioinformatics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10076771/
https://www.ncbi.nlm.nih.gov/pubmed/37035036
http://dx.doi.org/10.3389/fbinf.2023.1125949
work_keys_str_mv AT prattdexter translatingdesktopsuccesstothewebinthecytoscapeproject
AT pillichrudolft translatingdesktopsuccesstothewebinthecytoscapeproject
AT morrisjohnh translatingdesktopsuccesstothewebinthecytoscapeproject

Ejemplares similares