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CrystalMELA: a new crystallographic machine learning platform for crystal system determination
Determination of the crystal system and space group is the first step of crystal structure analysis. Often this turns out to be a bottleneck in the material characterization workflow for polycrystalline compounds, thus requiring manual interventions. This work proposes a new machine-learning (ML)-ba...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
International Union of Crystallography
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10077848/ https://www.ncbi.nlm.nih.gov/pubmed/37032966 http://dx.doi.org/10.1107/S1600576723000596 |
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author | Corriero, Nicola Rizzi, Rosanna Settembre, Gaetano Del Buono, Nicoletta Diacono, Domenico |
author_facet | Corriero, Nicola Rizzi, Rosanna Settembre, Gaetano Del Buono, Nicoletta Diacono, Domenico |
author_sort | Corriero, Nicola |
collection | PubMed |
description | Determination of the crystal system and space group is the first step of crystal structure analysis. Often this turns out to be a bottleneck in the material characterization workflow for polycrystalline compounds, thus requiring manual interventions. This work proposes a new machine-learning (ML)-based web platform, CrystalMELA (Crystallography MachinE LeArning), for crystal systems classification. Two different ML models, random forest and convolutional neural network, are available through the platform, as well as the extremely randomized trees algorithm, available from the literature. The ML models learned from simulated powder X-ray diffraction patterns of more than 280 000 published crystal structures from organic, inorganic and metal–organic compounds and minerals which were collected from the POW_COD database. A crystal system classification accuracy of 70%, which improved to more than 90% when considering the Top-2 classification accuracy, was obtained in tenfold cross-validation. The validity of the trained models has also been tested against independent experimental data of published compounds. The classification options in the CrystalMELA platform are powerful, easy to use and supported by a user-friendly graphic interface. They can be extended over time with contributions from the community. The tool is freely available at https://www.ba.ic.cnr.it/softwareic/crystalmela/ following registration. |
format | Online Article Text |
id | pubmed-10077848 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | International Union of Crystallography |
record_format | MEDLINE/PubMed |
spelling | pubmed-100778482023-04-07 CrystalMELA: a new crystallographic machine learning platform for crystal system determination Corriero, Nicola Rizzi, Rosanna Settembre, Gaetano Del Buono, Nicoletta Diacono, Domenico J Appl Crystallogr Research Papers Determination of the crystal system and space group is the first step of crystal structure analysis. Often this turns out to be a bottleneck in the material characterization workflow for polycrystalline compounds, thus requiring manual interventions. This work proposes a new machine-learning (ML)-based web platform, CrystalMELA (Crystallography MachinE LeArning), for crystal systems classification. Two different ML models, random forest and convolutional neural network, are available through the platform, as well as the extremely randomized trees algorithm, available from the literature. The ML models learned from simulated powder X-ray diffraction patterns of more than 280 000 published crystal structures from organic, inorganic and metal–organic compounds and minerals which were collected from the POW_COD database. A crystal system classification accuracy of 70%, which improved to more than 90% when considering the Top-2 classification accuracy, was obtained in tenfold cross-validation. The validity of the trained models has also been tested against independent experimental data of published compounds. The classification options in the CrystalMELA platform are powerful, easy to use and supported by a user-friendly graphic interface. They can be extended over time with contributions from the community. The tool is freely available at https://www.ba.ic.cnr.it/softwareic/crystalmela/ following registration. International Union of Crystallography 2023-02-28 /pmc/articles/PMC10077848/ /pubmed/37032966 http://dx.doi.org/10.1107/S1600576723000596 Text en © Nicola Corriero et al. 2023 https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited. |
spellingShingle | Research Papers Corriero, Nicola Rizzi, Rosanna Settembre, Gaetano Del Buono, Nicoletta Diacono, Domenico CrystalMELA: a new crystallographic machine learning platform for crystal system determination |
title |
CrystalMELA: a new crystallographic machine learning platform for crystal system determination |
title_full |
CrystalMELA: a new crystallographic machine learning platform for crystal system determination |
title_fullStr |
CrystalMELA: a new crystallographic machine learning platform for crystal system determination |
title_full_unstemmed |
CrystalMELA: a new crystallographic machine learning platform for crystal system determination |
title_short |
CrystalMELA: a new crystallographic machine learning platform for crystal system determination |
title_sort | crystalmela: a new crystallographic machine learning platform for crystal system determination |
topic | Research Papers |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10077848/ https://www.ncbi.nlm.nih.gov/pubmed/37032966 http://dx.doi.org/10.1107/S1600576723000596 |
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