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CrystalMELA: a new crystallographic machine learning platform for crystal system determination

Determination of the crystal system and space group is the first step of crystal structure analysis. Often this turns out to be a bottleneck in the material characterization workflow for polycrystalline compounds, thus requiring manual interventions. This work proposes a new machine-learning (ML)-ba...

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Autores principales: Corriero, Nicola, Rizzi, Rosanna, Settembre, Gaetano, Del Buono, Nicoletta, Diacono, Domenico
Formato: Online Artículo Texto
Lenguaje:English
Publicado: International Union of Crystallography 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10077848/
https://www.ncbi.nlm.nih.gov/pubmed/37032966
http://dx.doi.org/10.1107/S1600576723000596
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author Corriero, Nicola
Rizzi, Rosanna
Settembre, Gaetano
Del Buono, Nicoletta
Diacono, Domenico
author_facet Corriero, Nicola
Rizzi, Rosanna
Settembre, Gaetano
Del Buono, Nicoletta
Diacono, Domenico
author_sort Corriero, Nicola
collection PubMed
description Determination of the crystal system and space group is the first step of crystal structure analysis. Often this turns out to be a bottleneck in the material characterization workflow for polycrystalline compounds, thus requiring manual interventions. This work proposes a new machine-learning (ML)-based web platform, CrystalMELA (Crystallography MachinE LeArning), for crystal systems classification. Two different ML models, random forest and convolutional neural network, are available through the platform, as well as the extremely randomized trees algorithm, available from the literature. The ML models learned from simulated powder X-ray diffraction patterns of more than 280 000 published crystal structures from organic, inorganic and metal–organic compounds and minerals which were collected from the POW_COD database. A crystal system classification accuracy of 70%, which improved to more than 90% when considering the Top-2 classification accuracy, was obtained in tenfold cross-validation. The validity of the trained models has also been tested against independent experimental data of published compounds. The classification options in the CrystalMELA platform are powerful, easy to use and supported by a user-friendly graphic interface. They can be extended over time with contributions from the community. The tool is freely available at https://www.ba.ic.cnr.it/softwareic/crystalmela/ following registration.
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spelling pubmed-100778482023-04-07 CrystalMELA: a new crystallographic machine learning platform for crystal system determination Corriero, Nicola Rizzi, Rosanna Settembre, Gaetano Del Buono, Nicoletta Diacono, Domenico J Appl Crystallogr Research Papers Determination of the crystal system and space group is the first step of crystal structure analysis. Often this turns out to be a bottleneck in the material characterization workflow for polycrystalline compounds, thus requiring manual interventions. This work proposes a new machine-learning (ML)-based web platform, CrystalMELA (Crystallography MachinE LeArning), for crystal systems classification. Two different ML models, random forest and convolutional neural network, are available through the platform, as well as the extremely randomized trees algorithm, available from the literature. The ML models learned from simulated powder X-ray diffraction patterns of more than 280 000 published crystal structures from organic, inorganic and metal–organic compounds and minerals which were collected from the POW_COD database. A crystal system classification accuracy of 70%, which improved to more than 90% when considering the Top-2 classification accuracy, was obtained in tenfold cross-validation. The validity of the trained models has also been tested against independent experimental data of published compounds. The classification options in the CrystalMELA platform are powerful, easy to use and supported by a user-friendly graphic interface. They can be extended over time with contributions from the community. The tool is freely available at https://www.ba.ic.cnr.it/softwareic/crystalmela/ following registration. International Union of Crystallography 2023-02-28 /pmc/articles/PMC10077848/ /pubmed/37032966 http://dx.doi.org/10.1107/S1600576723000596 Text en © Nicola Corriero et al. 2023 https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
spellingShingle Research Papers
Corriero, Nicola
Rizzi, Rosanna
Settembre, Gaetano
Del Buono, Nicoletta
Diacono, Domenico
CrystalMELA: a new crystallographic machine learning platform for crystal system determination
title CrystalMELA: a new crystallographic machine learning platform for crystal system determination
title_full CrystalMELA: a new crystallographic machine learning platform for crystal system determination
title_fullStr CrystalMELA: a new crystallographic machine learning platform for crystal system determination
title_full_unstemmed CrystalMELA: a new crystallographic machine learning platform for crystal system determination
title_short CrystalMELA: a new crystallographic machine learning platform for crystal system determination
title_sort crystalmela: a new crystallographic machine learning platform for crystal system determination
topic Research Papers
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10077848/
https://www.ncbi.nlm.nih.gov/pubmed/37032966
http://dx.doi.org/10.1107/S1600576723000596
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