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A novel zinc metabolism-related gene signature to predict prognosis and immunotherapy response in lung adenocarcinoma

BACKGROUND: Zinc is a key mineral element in regulating cell growth, development, and immune system. We constructed the zinc metabolism-related gene signature to predict prognosis and immunotherapy response for lung adenocarcinoma (LUAD). METHODS: Zinc metabolism-associated gene sets were obtained f...

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Autores principales: Chang, Wuguang, Li, Hongmu, Ou, Wei, Wang, Si-Yu
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10079938/
https://www.ncbi.nlm.nih.gov/pubmed/37033934
http://dx.doi.org/10.3389/fimmu.2023.1147528
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author Chang, Wuguang
Li, Hongmu
Ou, Wei
Wang, Si-Yu
author_facet Chang, Wuguang
Li, Hongmu
Ou, Wei
Wang, Si-Yu
author_sort Chang, Wuguang
collection PubMed
description BACKGROUND: Zinc is a key mineral element in regulating cell growth, development, and immune system. We constructed the zinc metabolism-related gene signature to predict prognosis and immunotherapy response for lung adenocarcinoma (LUAD). METHODS: Zinc metabolism-associated gene sets were obtained from Molecular Signature Database. Then, the zinc metabolism-related gene signature (ZMRGS) was constructed and validated. After combining with clinical characteristics, the nomogram for practical application was constructed. The differences in biological pathways, immune molecules, and tumor microenvironment (TME) between the different groups were analyzed. Tumor Immune Dysfunction and Exclusion algorithm (TIDE) and two immunotherapy datasets were used to evaluate the immunotherapy response. RESULTS: The signature was constructed according to six key zinc metabolism-related genes, which can well predict the prognosis of LUAD patients. The nomogram also showed excellent prediction performance. Functional analysis showed that the low-risk group was in the status of immune activation. More importantly, the lower risk score of LUAD patients showed a higher response rate to immunotherapy. CONCLUSION: The state of zinc metabolism is closely connected to prognosis, tumor microenvironment, and response to immunotherapy. The zinc metabolism-related signature can well evaluate the prognosis and immunotherapy response for LUAD patients.
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spelling pubmed-100799382023-04-08 A novel zinc metabolism-related gene signature to predict prognosis and immunotherapy response in lung adenocarcinoma Chang, Wuguang Li, Hongmu Ou, Wei Wang, Si-Yu Front Immunol Immunology BACKGROUND: Zinc is a key mineral element in regulating cell growth, development, and immune system. We constructed the zinc metabolism-related gene signature to predict prognosis and immunotherapy response for lung adenocarcinoma (LUAD). METHODS: Zinc metabolism-associated gene sets were obtained from Molecular Signature Database. Then, the zinc metabolism-related gene signature (ZMRGS) was constructed and validated. After combining with clinical characteristics, the nomogram for practical application was constructed. The differences in biological pathways, immune molecules, and tumor microenvironment (TME) between the different groups were analyzed. Tumor Immune Dysfunction and Exclusion algorithm (TIDE) and two immunotherapy datasets were used to evaluate the immunotherapy response. RESULTS: The signature was constructed according to six key zinc metabolism-related genes, which can well predict the prognosis of LUAD patients. The nomogram also showed excellent prediction performance. Functional analysis showed that the low-risk group was in the status of immune activation. More importantly, the lower risk score of LUAD patients showed a higher response rate to immunotherapy. CONCLUSION: The state of zinc metabolism is closely connected to prognosis, tumor microenvironment, and response to immunotherapy. The zinc metabolism-related signature can well evaluate the prognosis and immunotherapy response for LUAD patients. Frontiers Media S.A. 2023-03-24 /pmc/articles/PMC10079938/ /pubmed/37033934 http://dx.doi.org/10.3389/fimmu.2023.1147528 Text en Copyright © 2023 Chang, Li, Ou and Wang https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Immunology
Chang, Wuguang
Li, Hongmu
Ou, Wei
Wang, Si-Yu
A novel zinc metabolism-related gene signature to predict prognosis and immunotherapy response in lung adenocarcinoma
title A novel zinc metabolism-related gene signature to predict prognosis and immunotherapy response in lung adenocarcinoma
title_full A novel zinc metabolism-related gene signature to predict prognosis and immunotherapy response in lung adenocarcinoma
title_fullStr A novel zinc metabolism-related gene signature to predict prognosis and immunotherapy response in lung adenocarcinoma
title_full_unstemmed A novel zinc metabolism-related gene signature to predict prognosis and immunotherapy response in lung adenocarcinoma
title_short A novel zinc metabolism-related gene signature to predict prognosis and immunotherapy response in lung adenocarcinoma
title_sort novel zinc metabolism-related gene signature to predict prognosis and immunotherapy response in lung adenocarcinoma
topic Immunology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10079938/
https://www.ncbi.nlm.nih.gov/pubmed/37033934
http://dx.doi.org/10.3389/fimmu.2023.1147528
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