Cargando…
Heterogeneous pattern of gene expression driven by TTN mutation is involved in the construction of a prognosis model of lung squamous cell carcinoma
OBJECTIVE: To investigate the impact that TTN mutation had on the gene heterogeneity expression and prognosis in patients with lung adenocarcinoma. METHODS: In this study, the Cancer Genome Atlas (TCGA) dataset was used to analyze the TTN mutations in lung adenocarcinoma. Lung adenocarcinoma data wa...
Autores principales: | , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2023
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10080394/ https://www.ncbi.nlm.nih.gov/pubmed/37035196 http://dx.doi.org/10.3389/fonc.2023.916568 |
_version_ | 1785020914186846208 |
---|---|
author | Liu, Zhao Zhao, Xiaowen Wang, Ruihong Tang, Xiangyue Zhao, Yuxiang Zhong, Guanghui Peng, Xin Zhang, Chunlin |
author_facet | Liu, Zhao Zhao, Xiaowen Wang, Ruihong Tang, Xiangyue Zhao, Yuxiang Zhong, Guanghui Peng, Xin Zhang, Chunlin |
author_sort | Liu, Zhao |
collection | PubMed |
description | OBJECTIVE: To investigate the impact that TTN mutation had on the gene heterogeneity expression and prognosis in patients with lung adenocarcinoma. METHODS: In this study, the Cancer Genome Atlas (TCGA) dataset was used to analyze the TTN mutations in lung adenocarcinoma. Lung adenocarcinoma data was collected from the TCGA database, clinical information of patients was analyzed, and bioinformatics statistical methods were applied for mutation analysis and prognosis survival analysis. The results were verified using the GEO dataset. RESULTS: The incidence of TTN mutations in lung adenocarcinoma was found to be 73%, and it was related to the prognosis of lung adenocarcinoma. Ten genes were screened with significant contributions to prognosis. A prognosis model was constructed and verified by LASSO COX analysis in the TCGA and GEO datasets based on these ten beneficial factors. The independent prognostic factor H2BC9 for TTN mutation-driven gene heterogeneity expression was screened through multi-factor COX regression analysis. CONCLUSION: Our data showed that the gene heterogeneity expression, which was driven by TTN mutations, prolonged the survival of lung adenocarcinoma patients and provided valuable clues for the prognosis of TTN gene mutations in lung adenocarcinoma. |
format | Online Article Text |
id | pubmed-10080394 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-100803942023-04-08 Heterogeneous pattern of gene expression driven by TTN mutation is involved in the construction of a prognosis model of lung squamous cell carcinoma Liu, Zhao Zhao, Xiaowen Wang, Ruihong Tang, Xiangyue Zhao, Yuxiang Zhong, Guanghui Peng, Xin Zhang, Chunlin Front Oncol Oncology OBJECTIVE: To investigate the impact that TTN mutation had on the gene heterogeneity expression and prognosis in patients with lung adenocarcinoma. METHODS: In this study, the Cancer Genome Atlas (TCGA) dataset was used to analyze the TTN mutations in lung adenocarcinoma. Lung adenocarcinoma data was collected from the TCGA database, clinical information of patients was analyzed, and bioinformatics statistical methods were applied for mutation analysis and prognosis survival analysis. The results were verified using the GEO dataset. RESULTS: The incidence of TTN mutations in lung adenocarcinoma was found to be 73%, and it was related to the prognosis of lung adenocarcinoma. Ten genes were screened with significant contributions to prognosis. A prognosis model was constructed and verified by LASSO COX analysis in the TCGA and GEO datasets based on these ten beneficial factors. The independent prognostic factor H2BC9 for TTN mutation-driven gene heterogeneity expression was screened through multi-factor COX regression analysis. CONCLUSION: Our data showed that the gene heterogeneity expression, which was driven by TTN mutations, prolonged the survival of lung adenocarcinoma patients and provided valuable clues for the prognosis of TTN gene mutations in lung adenocarcinoma. Frontiers Media S.A. 2023-03-23 /pmc/articles/PMC10080394/ /pubmed/37035196 http://dx.doi.org/10.3389/fonc.2023.916568 Text en Copyright © 2023 Liu, Zhao, Wang, Tang, Zhao, Zhong, Peng and Zhang https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Oncology Liu, Zhao Zhao, Xiaowen Wang, Ruihong Tang, Xiangyue Zhao, Yuxiang Zhong, Guanghui Peng, Xin Zhang, Chunlin Heterogeneous pattern of gene expression driven by TTN mutation is involved in the construction of a prognosis model of lung squamous cell carcinoma |
title | Heterogeneous pattern of gene expression driven by TTN mutation is involved in the construction of a prognosis model of lung squamous cell carcinoma |
title_full | Heterogeneous pattern of gene expression driven by TTN mutation is involved in the construction of a prognosis model of lung squamous cell carcinoma |
title_fullStr | Heterogeneous pattern of gene expression driven by TTN mutation is involved in the construction of a prognosis model of lung squamous cell carcinoma |
title_full_unstemmed | Heterogeneous pattern of gene expression driven by TTN mutation is involved in the construction of a prognosis model of lung squamous cell carcinoma |
title_short | Heterogeneous pattern of gene expression driven by TTN mutation is involved in the construction of a prognosis model of lung squamous cell carcinoma |
title_sort | heterogeneous pattern of gene expression driven by ttn mutation is involved in the construction of a prognosis model of lung squamous cell carcinoma |
topic | Oncology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10080394/ https://www.ncbi.nlm.nih.gov/pubmed/37035196 http://dx.doi.org/10.3389/fonc.2023.916568 |
work_keys_str_mv | AT liuzhao heterogeneouspatternofgeneexpressiondrivenbyttnmutationisinvolvedintheconstructionofaprognosismodeloflungsquamouscellcarcinoma AT zhaoxiaowen heterogeneouspatternofgeneexpressiondrivenbyttnmutationisinvolvedintheconstructionofaprognosismodeloflungsquamouscellcarcinoma AT wangruihong heterogeneouspatternofgeneexpressiondrivenbyttnmutationisinvolvedintheconstructionofaprognosismodeloflungsquamouscellcarcinoma AT tangxiangyue heterogeneouspatternofgeneexpressiondrivenbyttnmutationisinvolvedintheconstructionofaprognosismodeloflungsquamouscellcarcinoma AT zhaoyuxiang heterogeneouspatternofgeneexpressiondrivenbyttnmutationisinvolvedintheconstructionofaprognosismodeloflungsquamouscellcarcinoma AT zhongguanghui heterogeneouspatternofgeneexpressiondrivenbyttnmutationisinvolvedintheconstructionofaprognosismodeloflungsquamouscellcarcinoma AT pengxin heterogeneouspatternofgeneexpressiondrivenbyttnmutationisinvolvedintheconstructionofaprognosismodeloflungsquamouscellcarcinoma AT zhangchunlin heterogeneouspatternofgeneexpressiondrivenbyttnmutationisinvolvedintheconstructionofaprognosismodeloflungsquamouscellcarcinoma |