Cargando…
Flexible and efficient handling of nanopore sequencing signal data with slow5tools
Nanopore sequencing is being rapidly adopted in genomics. We recently developed SLOW5, a new file format with advantages for storage and analysis of raw signal data from nanopore experiments. Here we introduce slow5tools, an intuitive toolkit for handling nanopore data in SLOW5 format. Slow5tools en...
Autores principales: | Samarakoon, Hiruna, Ferguson, James M., Jenner, Sasha P., Amos, Timothy G., Parameswaran, Sri, Gamaarachchi, Hasindu, Deveson, Ira W. |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2023
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10080837/ https://www.ncbi.nlm.nih.gov/pubmed/37024927 http://dx.doi.org/10.1186/s13059-023-02910-3 |
Ejemplares similares
-
Fast nanopore sequencing data analysis with SLOW5
por: Gamaarachchi, Hasindu, et al.
Publicado: (2022) -
Accelerated nanopore basecalling with SLOW5 data format
por: Samarakoon, Hiruna, et al.
Publicado: (2023) -
Efficient end-to-end long-read sequence mapping using minimap2-fpga integrated with hardware accelerated chaining
por: Liyanage, Kisaru, et al.
Publicado: (2023) -
Genopo: a nanopore sequencing analysis toolkit for portable Android devices
por: Samarakoon, Hiruna, et al.
Publicado: (2020) -
GPU accelerated adaptive banded event alignment for rapid comparative nanopore signal analysis
por: Gamaarachchi, Hasindu, et al.
Publicado: (2020)