HiCube: interactive visualization of multiscale and multimodal Hi-C and 3D genome data

SUMMARY: HiCube is a lightweight web application for interactive visualization and exploration of diverse types of genomics data at multiscale resolutions. Especially, HiCube displays synchronized views of Hi-C contact maps and 3D genome structures with user-friendly annotation and configuration too...

Descripción completa

Detalles Bibliográficos
Autores principales: Ye, Tiantian, Hu, Yangyang, Pun, Sydney, Ma, Wenxiu
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2023
Materias:
Applications Note
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10081873/
https://www.ncbi.nlm.nih.gov/pubmed/36961339
http://dx.doi.org/10.1093/bioinformatics/btad154
Descripción
Sumario:SUMMARY: HiCube is a lightweight web application for interactive visualization and exploration of diverse types of genomics data at multiscale resolutions. Especially, HiCube displays synchronized views of Hi-C contact maps and 3D genome structures with user-friendly annotation and configuration tools, thereby facilitating the study of 3D genome organization and function. AVAILABILITY AND IMPLEMENTATION: HiCube is implemented in Javascript and can be installed via NPM. The source code is freely available at GitHub (https://github.com/wmalab/HiCube).

Ejemplares similares