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A novel dataset and efficient deep learning framework for automated grading of renal cell carcinoma from kidney histopathology images

Trends of kidney cancer cases worldwide are expected to increase persistently and this inspires the modification of the traditional diagnosis system to respond to future challenges. Renal Cell Carcinoma (RCC) is the most common kidney cancer and responsible for 80–85% of all renal tumors. This study...

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Autores principales: Chanchal, Amit Kumar, Lal, Shyam, Kumar, Ranjeet, Kwak, Jin Tae, Kini, Jyoti
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10082027/
https://www.ncbi.nlm.nih.gov/pubmed/37029115
http://dx.doi.org/10.1038/s41598-023-31275-7
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author Chanchal, Amit Kumar
Lal, Shyam
Kumar, Ranjeet
Kwak, Jin Tae
Kini, Jyoti
author_facet Chanchal, Amit Kumar
Lal, Shyam
Kumar, Ranjeet
Kwak, Jin Tae
Kini, Jyoti
author_sort Chanchal, Amit Kumar
collection PubMed
description Trends of kidney cancer cases worldwide are expected to increase persistently and this inspires the modification of the traditional diagnosis system to respond to future challenges. Renal Cell Carcinoma (RCC) is the most common kidney cancer and responsible for 80–85% of all renal tumors. This study proposed a robust and computationally efficient fully automated Renal Cell Carcinoma Grading Network (RCCGNet) from kidney histopathology images. The proposed RCCGNet contains a shared channel residual (SCR) block which allows the network to learn feature maps associated with different versions of the input with two parallel paths. The SCR block shares the information between two different layers and operates the shared data separately by providing beneficial supplements to each other. As a part of this study, we also introduced a new dataset for the grading of RCC with five different grades. We obtained 722 Hematoxylin & Eosin (H &E) stained slides of different patients and associated grades from the Department of Pathology, Kasturba Medical College (KMC), Mangalore, India. We performed comparable experiments which include deep learning models trained from scratch as well as transfer learning techniques using pre-trained weights of the ImageNet. To show the proposed model is generalized and independent of the dataset, we experimented with one additional well-established data called BreakHis dataset for eight class-classification. The experimental result shows that proposed RCCGNet is superior in comparison with the eight most recent classification methods on the proposed dataset as well as BreakHis dataset in terms of prediction accuracy and computational complexity.
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spelling pubmed-100820272023-04-09 A novel dataset and efficient deep learning framework for automated grading of renal cell carcinoma from kidney histopathology images Chanchal, Amit Kumar Lal, Shyam Kumar, Ranjeet Kwak, Jin Tae Kini, Jyoti Sci Rep Article Trends of kidney cancer cases worldwide are expected to increase persistently and this inspires the modification of the traditional diagnosis system to respond to future challenges. Renal Cell Carcinoma (RCC) is the most common kidney cancer and responsible for 80–85% of all renal tumors. This study proposed a robust and computationally efficient fully automated Renal Cell Carcinoma Grading Network (RCCGNet) from kidney histopathology images. The proposed RCCGNet contains a shared channel residual (SCR) block which allows the network to learn feature maps associated with different versions of the input with two parallel paths. The SCR block shares the information between two different layers and operates the shared data separately by providing beneficial supplements to each other. As a part of this study, we also introduced a new dataset for the grading of RCC with five different grades. We obtained 722 Hematoxylin & Eosin (H &E) stained slides of different patients and associated grades from the Department of Pathology, Kasturba Medical College (KMC), Mangalore, India. We performed comparable experiments which include deep learning models trained from scratch as well as transfer learning techniques using pre-trained weights of the ImageNet. To show the proposed model is generalized and independent of the dataset, we experimented with one additional well-established data called BreakHis dataset for eight class-classification. The experimental result shows that proposed RCCGNet is superior in comparison with the eight most recent classification methods on the proposed dataset as well as BreakHis dataset in terms of prediction accuracy and computational complexity. Nature Publishing Group UK 2023-04-07 /pmc/articles/PMC10082027/ /pubmed/37029115 http://dx.doi.org/10.1038/s41598-023-31275-7 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Chanchal, Amit Kumar
Lal, Shyam
Kumar, Ranjeet
Kwak, Jin Tae
Kini, Jyoti
A novel dataset and efficient deep learning framework for automated grading of renal cell carcinoma from kidney histopathology images
title A novel dataset and efficient deep learning framework for automated grading of renal cell carcinoma from kidney histopathology images
title_full A novel dataset and efficient deep learning framework for automated grading of renal cell carcinoma from kidney histopathology images
title_fullStr A novel dataset and efficient deep learning framework for automated grading of renal cell carcinoma from kidney histopathology images
title_full_unstemmed A novel dataset and efficient deep learning framework for automated grading of renal cell carcinoma from kidney histopathology images
title_short A novel dataset and efficient deep learning framework for automated grading of renal cell carcinoma from kidney histopathology images
title_sort novel dataset and efficient deep learning framework for automated grading of renal cell carcinoma from kidney histopathology images
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10082027/
https://www.ncbi.nlm.nih.gov/pubmed/37029115
http://dx.doi.org/10.1038/s41598-023-31275-7
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