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A novel oxidative-stress related lncRNA signature predicts the prognosis of clear cell renal cell carcinoma
Clear cell renal cell carcinoma (ccRCC) is a primary malignant tumour of tubular epithelial origin and is most common in the urinary tract. Growing evidence suggests that oxidative stress (OS), generates high levels of reactive oxygen species (ROS) and free radicals, and plays a critical role in can...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10082204/ https://www.ncbi.nlm.nih.gov/pubmed/37029263 http://dx.doi.org/10.1038/s41598-023-32891-z |
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author | Zhang, Yu Zhou, Guozhong Shi, Wei Shi, Weili Hu, Meijun Kong, Defu Long, Rong Chen, Nan |
author_facet | Zhang, Yu Zhou, Guozhong Shi, Wei Shi, Weili Hu, Meijun Kong, Defu Long, Rong Chen, Nan |
author_sort | Zhang, Yu |
collection | PubMed |
description | Clear cell renal cell carcinoma (ccRCC) is a primary malignant tumour of tubular epithelial origin and is most common in the urinary tract. Growing evidence suggests that oxidative stress (OS), generates high levels of reactive oxygen species (ROS) and free radicals, and plays a critical role in cancer in humans. However, the predictive value of OS-related long non-coding RNAs (lncRNAs) in ccRCC remains unclear. We constructed a predictive signature of survival based on OS-related lncRNAs that were obtained from The Cancer Genome Atlas (TCGA–KIRC), to predict the prognosis of patients with ccRCC. The signature comprised seven lncRNAs: SPART-AS1, AL162586.1, LINC00944, LINC01550, HOXB-AS4, LINC02027, and DOCK9-DT. OS-related signature of lncRNAs had diagnostic efficiency higher than that of clinicopathological variables, with an area of 0.794 under the receiver operating characteristic curve. Additionally, the nomogram based on risk scores and clinicopathological variables (age, gender, grade, stage, M-stage, and N-stage) showed strong predictive performance. Patients with high-risk were found to be more sensitive to the therapeutic drugs ABT.888, AICAR, MS.275, sunitinib, AZD.2281, and GDC.0449. Our constructed the predictive signature can independently predict the prognosis of patients with ccRCC; however, the underlying mechanism needs further investigation. |
format | Online Article Text |
id | pubmed-10082204 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-100822042023-04-09 A novel oxidative-stress related lncRNA signature predicts the prognosis of clear cell renal cell carcinoma Zhang, Yu Zhou, Guozhong Shi, Wei Shi, Weili Hu, Meijun Kong, Defu Long, Rong Chen, Nan Sci Rep Article Clear cell renal cell carcinoma (ccRCC) is a primary malignant tumour of tubular epithelial origin and is most common in the urinary tract. Growing evidence suggests that oxidative stress (OS), generates high levels of reactive oxygen species (ROS) and free radicals, and plays a critical role in cancer in humans. However, the predictive value of OS-related long non-coding RNAs (lncRNAs) in ccRCC remains unclear. We constructed a predictive signature of survival based on OS-related lncRNAs that were obtained from The Cancer Genome Atlas (TCGA–KIRC), to predict the prognosis of patients with ccRCC. The signature comprised seven lncRNAs: SPART-AS1, AL162586.1, LINC00944, LINC01550, HOXB-AS4, LINC02027, and DOCK9-DT. OS-related signature of lncRNAs had diagnostic efficiency higher than that of clinicopathological variables, with an area of 0.794 under the receiver operating characteristic curve. Additionally, the nomogram based on risk scores and clinicopathological variables (age, gender, grade, stage, M-stage, and N-stage) showed strong predictive performance. Patients with high-risk were found to be more sensitive to the therapeutic drugs ABT.888, AICAR, MS.275, sunitinib, AZD.2281, and GDC.0449. Our constructed the predictive signature can independently predict the prognosis of patients with ccRCC; however, the underlying mechanism needs further investigation. Nature Publishing Group UK 2023-04-07 /pmc/articles/PMC10082204/ /pubmed/37029263 http://dx.doi.org/10.1038/s41598-023-32891-z Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Zhang, Yu Zhou, Guozhong Shi, Wei Shi, Weili Hu, Meijun Kong, Defu Long, Rong Chen, Nan A novel oxidative-stress related lncRNA signature predicts the prognosis of clear cell renal cell carcinoma |
title | A novel oxidative-stress related lncRNA signature predicts the prognosis of clear cell renal cell carcinoma |
title_full | A novel oxidative-stress related lncRNA signature predicts the prognosis of clear cell renal cell carcinoma |
title_fullStr | A novel oxidative-stress related lncRNA signature predicts the prognosis of clear cell renal cell carcinoma |
title_full_unstemmed | A novel oxidative-stress related lncRNA signature predicts the prognosis of clear cell renal cell carcinoma |
title_short | A novel oxidative-stress related lncRNA signature predicts the prognosis of clear cell renal cell carcinoma |
title_sort | novel oxidative-stress related lncrna signature predicts the prognosis of clear cell renal cell carcinoma |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10082204/ https://www.ncbi.nlm.nih.gov/pubmed/37029263 http://dx.doi.org/10.1038/s41598-023-32891-z |
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