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Live 4D-OCT denoising with self-supervised deep learning
By providing three-dimensional visualization of tissues and instruments at high resolution, live volumetric optical coherence tomography (4D-OCT) has the potential to revolutionize ophthalmic surgery. However, the necessary imaging speed is accompanied by increased noise levels. A high data rate and...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10082772/ https://www.ncbi.nlm.nih.gov/pubmed/37031338 http://dx.doi.org/10.1038/s41598-023-32695-1 |
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author | Nienhaus, Jonas Matten, Philipp Britten, Anja Scherer, Julius Höck, Eva Freytag, Alexander Drexler, Wolfgang Leitgeb, Rainer A. Schlegl, Thomas Schmoll, Tilman |
author_facet | Nienhaus, Jonas Matten, Philipp Britten, Anja Scherer, Julius Höck, Eva Freytag, Alexander Drexler, Wolfgang Leitgeb, Rainer A. Schlegl, Thomas Schmoll, Tilman |
author_sort | Nienhaus, Jonas |
collection | PubMed |
description | By providing three-dimensional visualization of tissues and instruments at high resolution, live volumetric optical coherence tomography (4D-OCT) has the potential to revolutionize ophthalmic surgery. However, the necessary imaging speed is accompanied by increased noise levels. A high data rate and the requirement for minimal latency impose major limitations for real-time noise reduction. In this work, we propose a low complexity neural network for denoising, directly incorporated into the image reconstruction pipeline of a microscope-integrated 4D-OCT prototype with an A-scan rate of 1.2 MHz. For this purpose, we trained a blind-spot network on unpaired OCT images using a self-supervised learning approach. With an optimized U-Net, only a few milliseconds of additional latency were introduced. Simultaneously, these architectural adaptations improved the numerical denoising performance compared to the basic setup, outperforming non-local filtering algorithms. Layers and edges of anatomical structures in B-scans were better preserved than with Gaussian filtering despite comparable processing time. By comparing scenes with and without denoising employed, we show that neural networks can be used to improve visual appearance of volumetric renderings in real time. Enhancing the rendering quality is an important step for the clinical acceptance and translation of 4D-OCT as an intra-surgical guidance tool. |
format | Online Article Text |
id | pubmed-10082772 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-100827722023-04-10 Live 4D-OCT denoising with self-supervised deep learning Nienhaus, Jonas Matten, Philipp Britten, Anja Scherer, Julius Höck, Eva Freytag, Alexander Drexler, Wolfgang Leitgeb, Rainer A. Schlegl, Thomas Schmoll, Tilman Sci Rep Article By providing three-dimensional visualization of tissues and instruments at high resolution, live volumetric optical coherence tomography (4D-OCT) has the potential to revolutionize ophthalmic surgery. However, the necessary imaging speed is accompanied by increased noise levels. A high data rate and the requirement for minimal latency impose major limitations for real-time noise reduction. In this work, we propose a low complexity neural network for denoising, directly incorporated into the image reconstruction pipeline of a microscope-integrated 4D-OCT prototype with an A-scan rate of 1.2 MHz. For this purpose, we trained a blind-spot network on unpaired OCT images using a self-supervised learning approach. With an optimized U-Net, only a few milliseconds of additional latency were introduced. Simultaneously, these architectural adaptations improved the numerical denoising performance compared to the basic setup, outperforming non-local filtering algorithms. Layers and edges of anatomical structures in B-scans were better preserved than with Gaussian filtering despite comparable processing time. By comparing scenes with and without denoising employed, we show that neural networks can be used to improve visual appearance of volumetric renderings in real time. Enhancing the rendering quality is an important step for the clinical acceptance and translation of 4D-OCT as an intra-surgical guidance tool. Nature Publishing Group UK 2023-04-08 /pmc/articles/PMC10082772/ /pubmed/37031338 http://dx.doi.org/10.1038/s41598-023-32695-1 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Nienhaus, Jonas Matten, Philipp Britten, Anja Scherer, Julius Höck, Eva Freytag, Alexander Drexler, Wolfgang Leitgeb, Rainer A. Schlegl, Thomas Schmoll, Tilman Live 4D-OCT denoising with self-supervised deep learning |
title | Live 4D-OCT denoising with self-supervised deep learning |
title_full | Live 4D-OCT denoising with self-supervised deep learning |
title_fullStr | Live 4D-OCT denoising with self-supervised deep learning |
title_full_unstemmed | Live 4D-OCT denoising with self-supervised deep learning |
title_short | Live 4D-OCT denoising with self-supervised deep learning |
title_sort | live 4d-oct denoising with self-supervised deep learning |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10082772/ https://www.ncbi.nlm.nih.gov/pubmed/37031338 http://dx.doi.org/10.1038/s41598-023-32695-1 |
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