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Machine learning based prediction for oncologic outcomes of renal cell carcinoma after surgery using Korean Renal Cell Carcinoma (KORCC) database

We developed a novel prediction model for recurrence and survival in patients with localized renal cell carcinoma (RCC) after surgery and a novel statistical method of machine learning (ML) to improve accuracy in predicting outcomes using a large Asian nationwide dataset, updated KOrean Renal Cell C...

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Autores principales: Kim, Jung Kwon, Lee, Sangchul, Hong, Sung Kyu, Kwak, Cheol, Jeong, Chang Wook, Kang, Seok Ho, Hong, Sung-Hoo, Kim, Yong-June, Chung, Jinsoo, Hwang, Eu Chang, Kwon, Tae Gyun, Byun, Seok-Soo, Jung, Yu Jin, Lim, Junghyun, Kim, Jiyeon, Oh, Hyeju
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10082844/
https://www.ncbi.nlm.nih.gov/pubmed/37031280
http://dx.doi.org/10.1038/s41598-023-30826-2
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author Kim, Jung Kwon
Lee, Sangchul
Hong, Sung Kyu
Kwak, Cheol
Jeong, Chang Wook
Kang, Seok Ho
Hong, Sung-Hoo
Kim, Yong-June
Chung, Jinsoo
Hwang, Eu Chang
Kwon, Tae Gyun
Byun, Seok-Soo
Jung, Yu Jin
Lim, Junghyun
Kim, Jiyeon
Oh, Hyeju
author_facet Kim, Jung Kwon
Lee, Sangchul
Hong, Sung Kyu
Kwak, Cheol
Jeong, Chang Wook
Kang, Seok Ho
Hong, Sung-Hoo
Kim, Yong-June
Chung, Jinsoo
Hwang, Eu Chang
Kwon, Tae Gyun
Byun, Seok-Soo
Jung, Yu Jin
Lim, Junghyun
Kim, Jiyeon
Oh, Hyeju
author_sort Kim, Jung Kwon
collection PubMed
description We developed a novel prediction model for recurrence and survival in patients with localized renal cell carcinoma (RCC) after surgery and a novel statistical method of machine learning (ML) to improve accuracy in predicting outcomes using a large Asian nationwide dataset, updated KOrean Renal Cell Carcinoma (KORCC) database that covered data for a total of 10,068 patients who had received surgery for RCC. After data pre-processing, feature selection was performed with an elastic net. Nine variables for recurrence and 13 variables for survival were extracted from 206 variables. Synthetic minority oversampling technique (SMOTE) was used for the training data set to solve the imbalance problem. We applied the most of existing ML algorithms introduced so far to evaluate the performance. We also performed subgroup analysis according to the histologic type. Diagnostic performances of all prediction models achieved high accuracy (range, 0.77–0.94) and F1-score (range, 0.77–0.97) in all tested metrics. In an external validation set, high accuracy and F1-score were well maintained in both recurrence and survival. In subgroup analysis of both clear and non-clear cell type RCC group, we also found a good prediction performance.
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spelling pubmed-100828442023-04-10 Machine learning based prediction for oncologic outcomes of renal cell carcinoma after surgery using Korean Renal Cell Carcinoma (KORCC) database Kim, Jung Kwon Lee, Sangchul Hong, Sung Kyu Kwak, Cheol Jeong, Chang Wook Kang, Seok Ho Hong, Sung-Hoo Kim, Yong-June Chung, Jinsoo Hwang, Eu Chang Kwon, Tae Gyun Byun, Seok-Soo Jung, Yu Jin Lim, Junghyun Kim, Jiyeon Oh, Hyeju Sci Rep Article We developed a novel prediction model for recurrence and survival in patients with localized renal cell carcinoma (RCC) after surgery and a novel statistical method of machine learning (ML) to improve accuracy in predicting outcomes using a large Asian nationwide dataset, updated KOrean Renal Cell Carcinoma (KORCC) database that covered data for a total of 10,068 patients who had received surgery for RCC. After data pre-processing, feature selection was performed with an elastic net. Nine variables for recurrence and 13 variables for survival were extracted from 206 variables. Synthetic minority oversampling technique (SMOTE) was used for the training data set to solve the imbalance problem. We applied the most of existing ML algorithms introduced so far to evaluate the performance. We also performed subgroup analysis according to the histologic type. Diagnostic performances of all prediction models achieved high accuracy (range, 0.77–0.94) and F1-score (range, 0.77–0.97) in all tested metrics. In an external validation set, high accuracy and F1-score were well maintained in both recurrence and survival. In subgroup analysis of both clear and non-clear cell type RCC group, we also found a good prediction performance. Nature Publishing Group UK 2023-04-08 /pmc/articles/PMC10082844/ /pubmed/37031280 http://dx.doi.org/10.1038/s41598-023-30826-2 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Kim, Jung Kwon
Lee, Sangchul
Hong, Sung Kyu
Kwak, Cheol
Jeong, Chang Wook
Kang, Seok Ho
Hong, Sung-Hoo
Kim, Yong-June
Chung, Jinsoo
Hwang, Eu Chang
Kwon, Tae Gyun
Byun, Seok-Soo
Jung, Yu Jin
Lim, Junghyun
Kim, Jiyeon
Oh, Hyeju
Machine learning based prediction for oncologic outcomes of renal cell carcinoma after surgery using Korean Renal Cell Carcinoma (KORCC) database
title Machine learning based prediction for oncologic outcomes of renal cell carcinoma after surgery using Korean Renal Cell Carcinoma (KORCC) database
title_full Machine learning based prediction for oncologic outcomes of renal cell carcinoma after surgery using Korean Renal Cell Carcinoma (KORCC) database
title_fullStr Machine learning based prediction for oncologic outcomes of renal cell carcinoma after surgery using Korean Renal Cell Carcinoma (KORCC) database
title_full_unstemmed Machine learning based prediction for oncologic outcomes of renal cell carcinoma after surgery using Korean Renal Cell Carcinoma (KORCC) database
title_short Machine learning based prediction for oncologic outcomes of renal cell carcinoma after surgery using Korean Renal Cell Carcinoma (KORCC) database
title_sort machine learning based prediction for oncologic outcomes of renal cell carcinoma after surgery using korean renal cell carcinoma (korcc) database
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10082844/
https://www.ncbi.nlm.nih.gov/pubmed/37031280
http://dx.doi.org/10.1038/s41598-023-30826-2
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