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Development of a risk model to predict prognosis in breast cancer based on cGAS-STING-related genes
Background: Breast cancer (BRCA) is regarded as a lethal and aggressive cancer with increasing morbidity and mortality worldwide. cGAS-STING signaling regulates the crosstalk between tumor cells and immune cells in the tumor microenvironment (TME), emerging as an important DNA-damage mechanism. Howe...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Frontiers Media S.A.
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10083333/ https://www.ncbi.nlm.nih.gov/pubmed/37051596 http://dx.doi.org/10.3389/fgene.2023.1121018 |
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author | Chen, Chen Wang, Junxiao Dong, Chao Lim, David Feng, Zhihui |
author_facet | Chen, Chen Wang, Junxiao Dong, Chao Lim, David Feng, Zhihui |
author_sort | Chen, Chen |
collection | PubMed |
description | Background: Breast cancer (BRCA) is regarded as a lethal and aggressive cancer with increasing morbidity and mortality worldwide. cGAS-STING signaling regulates the crosstalk between tumor cells and immune cells in the tumor microenvironment (TME), emerging as an important DNA-damage mechanism. However, cGAS-STING-related genes (CSRGs) have rarely been investigated for their prognostic value in breast cancer patients. Methods: Our study aimed to construct a risk model to predict the survival and prognosis of breast cancer patients. We obtained 1087 breast cancer samples and 179 normal breast tissue samples from the Cancer Genome Atlas (TCGA) and Genotype-Tissue Expression (GTEX) database, 35 immune-related differentially expression genes (DEGs) from cGAS-STING-related genes were systematically assessed. The Cox regression was applied for further selection, and 11 prognostic-related DEGs were used to develop a machine learning-based risk assessment and prognostic model. Results: We successfully developed a risk model to predict the prognostic value of breast cancer patients and its performance acquired effective validation. The results derived from Kaplan-Meier analysis revealed that the low-risk score patients had better overall survival (OS). The nomogram that integrated the risk score and clinical information was established and had good validity in predicting the overall survival of breast cancer patients. Significant correlations were observed between the risk score and tumor-infiltrating immune cells, immune checkpoints and the response to immunotherapy. The cGAS-STING-related genes risk score was also relevant to a series of clinic prognostic indicators such as tumor staging, molecular subtype, tumor recurrence, and drug therapeutic sensibility in breast cancer patients. Conclusion: cGAS-STING-related genes risk model provides a new credible risk stratification method to improve the clinical prognostic assessment for breast cancer. |
format | Online Article Text |
id | pubmed-10083333 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-100833332023-04-11 Development of a risk model to predict prognosis in breast cancer based on cGAS-STING-related genes Chen, Chen Wang, Junxiao Dong, Chao Lim, David Feng, Zhihui Front Genet Genetics Background: Breast cancer (BRCA) is regarded as a lethal and aggressive cancer with increasing morbidity and mortality worldwide. cGAS-STING signaling regulates the crosstalk between tumor cells and immune cells in the tumor microenvironment (TME), emerging as an important DNA-damage mechanism. However, cGAS-STING-related genes (CSRGs) have rarely been investigated for their prognostic value in breast cancer patients. Methods: Our study aimed to construct a risk model to predict the survival and prognosis of breast cancer patients. We obtained 1087 breast cancer samples and 179 normal breast tissue samples from the Cancer Genome Atlas (TCGA) and Genotype-Tissue Expression (GTEX) database, 35 immune-related differentially expression genes (DEGs) from cGAS-STING-related genes were systematically assessed. The Cox regression was applied for further selection, and 11 prognostic-related DEGs were used to develop a machine learning-based risk assessment and prognostic model. Results: We successfully developed a risk model to predict the prognostic value of breast cancer patients and its performance acquired effective validation. The results derived from Kaplan-Meier analysis revealed that the low-risk score patients had better overall survival (OS). The nomogram that integrated the risk score and clinical information was established and had good validity in predicting the overall survival of breast cancer patients. Significant correlations were observed between the risk score and tumor-infiltrating immune cells, immune checkpoints and the response to immunotherapy. The cGAS-STING-related genes risk score was also relevant to a series of clinic prognostic indicators such as tumor staging, molecular subtype, tumor recurrence, and drug therapeutic sensibility in breast cancer patients. Conclusion: cGAS-STING-related genes risk model provides a new credible risk stratification method to improve the clinical prognostic assessment for breast cancer. Frontiers Media S.A. 2023-03-27 /pmc/articles/PMC10083333/ /pubmed/37051596 http://dx.doi.org/10.3389/fgene.2023.1121018 Text en Copyright © 2023 Chen, Wang, Dong, Lim and Feng. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Genetics Chen, Chen Wang, Junxiao Dong, Chao Lim, David Feng, Zhihui Development of a risk model to predict prognosis in breast cancer based on cGAS-STING-related genes |
title | Development of a risk model to predict prognosis in breast cancer based on cGAS-STING-related genes |
title_full | Development of a risk model to predict prognosis in breast cancer based on cGAS-STING-related genes |
title_fullStr | Development of a risk model to predict prognosis in breast cancer based on cGAS-STING-related genes |
title_full_unstemmed | Development of a risk model to predict prognosis in breast cancer based on cGAS-STING-related genes |
title_short | Development of a risk model to predict prognosis in breast cancer based on cGAS-STING-related genes |
title_sort | development of a risk model to predict prognosis in breast cancer based on cgas-sting-related genes |
topic | Genetics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10083333/ https://www.ncbi.nlm.nih.gov/pubmed/37051596 http://dx.doi.org/10.3389/fgene.2023.1121018 |
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