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Multiple Leaf Sample Extraction System (MuLES): A tool to improve automated morphometric leaf studies

PREMISE: The measurement of leaf morphometric parameters from digital images can be time‐consuming or restrictive when using digital image analysis softwares. The Multiple Leaf Sample Extraction System (MuLES) is a new tool that enables high‐throughput leaf shape analysis with minimal user input or...

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Autores principales: Bowman, Christian S., Traband, Ryan, Wang, Xuesong, Knowles, Sara P., Lo, Sassoum, Jia, Zhenyu, Vorsa, Nicholi, Herniter, Ira A.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10083438/
https://www.ncbi.nlm.nih.gov/pubmed/37051583
http://dx.doi.org/10.1002/aps3.11513
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author Bowman, Christian S.
Traband, Ryan
Wang, Xuesong
Knowles, Sara P.
Lo, Sassoum
Jia, Zhenyu
Vorsa, Nicholi
Herniter, Ira A.
author_facet Bowman, Christian S.
Traband, Ryan
Wang, Xuesong
Knowles, Sara P.
Lo, Sassoum
Jia, Zhenyu
Vorsa, Nicholi
Herniter, Ira A.
author_sort Bowman, Christian S.
collection PubMed
description PREMISE: The measurement of leaf morphometric parameters from digital images can be time‐consuming or restrictive when using digital image analysis softwares. The Multiple Leaf Sample Extraction System (MuLES) is a new tool that enables high‐throughput leaf shape analysis with minimal user input or prerequisites, such as coding knowledge or image modification. METHODS AND RESULTS: MuLES uses contrasting pixel color values to distinguish between leaf objects and their background area, eliminating the need for color threshold–based methods or color correction cards typically required in other software methods. The leaf morphometric parameters measured by this software, especially leaf aspect ratio, were able to distinguish between large populations of different accessions for the same species in a high‐throughput manner. CONCLUSIONS: MuLES provides a simple method for the rapid measurement of leaf morphometric parameters in large plant populations from digital images and demonstrates the ability of leaf aspect ratio to distinguish between closely related plant types.
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spelling pubmed-100834382023-04-11 Multiple Leaf Sample Extraction System (MuLES): A tool to improve automated morphometric leaf studies Bowman, Christian S. Traband, Ryan Wang, Xuesong Knowles, Sara P. Lo, Sassoum Jia, Zhenyu Vorsa, Nicholi Herniter, Ira A. Appl Plant Sci Software Note PREMISE: The measurement of leaf morphometric parameters from digital images can be time‐consuming or restrictive when using digital image analysis softwares. The Multiple Leaf Sample Extraction System (MuLES) is a new tool that enables high‐throughput leaf shape analysis with minimal user input or prerequisites, such as coding knowledge or image modification. METHODS AND RESULTS: MuLES uses contrasting pixel color values to distinguish between leaf objects and their background area, eliminating the need for color threshold–based methods or color correction cards typically required in other software methods. The leaf morphometric parameters measured by this software, especially leaf aspect ratio, were able to distinguish between large populations of different accessions for the same species in a high‐throughput manner. CONCLUSIONS: MuLES provides a simple method for the rapid measurement of leaf morphometric parameters in large plant populations from digital images and demonstrates the ability of leaf aspect ratio to distinguish between closely related plant types. John Wiley and Sons Inc. 2023-03-21 /pmc/articles/PMC10083438/ /pubmed/37051583 http://dx.doi.org/10.1002/aps3.11513 Text en © 2023 The Authors. Applications in Plant Sciences is published by Wiley Periodicals LLC on behalf of Botanical Society of America. https://creativecommons.org/licenses/by-nc/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited and is not used for commercial purposes.
spellingShingle Software Note
Bowman, Christian S.
Traband, Ryan
Wang, Xuesong
Knowles, Sara P.
Lo, Sassoum
Jia, Zhenyu
Vorsa, Nicholi
Herniter, Ira A.
Multiple Leaf Sample Extraction System (MuLES): A tool to improve automated morphometric leaf studies
title Multiple Leaf Sample Extraction System (MuLES): A tool to improve automated morphometric leaf studies
title_full Multiple Leaf Sample Extraction System (MuLES): A tool to improve automated morphometric leaf studies
title_fullStr Multiple Leaf Sample Extraction System (MuLES): A tool to improve automated morphometric leaf studies
title_full_unstemmed Multiple Leaf Sample Extraction System (MuLES): A tool to improve automated morphometric leaf studies
title_short Multiple Leaf Sample Extraction System (MuLES): A tool to improve automated morphometric leaf studies
title_sort multiple leaf sample extraction system (mules): a tool to improve automated morphometric leaf studies
topic Software Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10083438/
https://www.ncbi.nlm.nih.gov/pubmed/37051583
http://dx.doi.org/10.1002/aps3.11513
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