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Construction and analysis of circular RNA-associated competing endogenous RNA network in the hippocampus of aged mice for the occurrence of postoperative cognitive dysfunction
Circular RNAs are highly stable single-stranded circular RNAs and enriched in the brain. Previous studies showed that circRNAs, as part of competing endogenous RNAs (ceRNAs) network, play an important role in neurodegenerative and psychiatric diseases. However, the mechanism of circRNA-related ceRNA...
Autores principales: | , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10084838/ https://www.ncbi.nlm.nih.gov/pubmed/37051377 http://dx.doi.org/10.3389/fnagi.2023.1098510 |
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author | Zhang, Mingzhu Suo, Zizheng Qu, Yinyin Zheng, Yuxiang Xu, Wenjie Zhang, Bowen Wang, Qiang Wu, Linxin Li, Shuai Cheng, Yaozhong Xiao, Ting Zheng, Hui Ni, Cheng |
author_facet | Zhang, Mingzhu Suo, Zizheng Qu, Yinyin Zheng, Yuxiang Xu, Wenjie Zhang, Bowen Wang, Qiang Wu, Linxin Li, Shuai Cheng, Yaozhong Xiao, Ting Zheng, Hui Ni, Cheng |
author_sort | Zhang, Mingzhu |
collection | PubMed |
description | Circular RNAs are highly stable single-stranded circular RNAs and enriched in the brain. Previous studies showed that circRNAs, as part of competing endogenous RNAs (ceRNAs) network, play an important role in neurodegenerative and psychiatric diseases. However, the mechanism of circRNA-related ceRNA networks in postoperative cognitive dysfunction (POCD) has not been elucidated yet. POCD usually occurs in elderly patients and is characterized by hippocampal dysfunction. Here, aged C57BL/6 mice were subjected to exploratory laparotomy under sevoflurane anesthesia, and this POCD model was verified by Morris water maze test. Whole-transcriptome sequencing was performed on the hippocampus of control group (Con) and surgery group. One hundred and seventy-seven DEcircRNAs, 221 DEmiRNAs and 2,052 DEmRNAs were identified between two groups. A ceRNA network was established with 92 DEcircRNAs having binding sites with 76 DEmiRNAs and 549 target DEmRNAs. In functional enrichment analysis, a pathological pattern of POCD was highlighted in the ceRNA network: Abnormal metabolic process in neural cells, including oxygen metabolism, could promote apoptosis and then affect the synaptic function, which may undermine the neural plasticity and eventually lead to changes in cognitive function and other behavioral patterns. In conclusion, this specific ceRNA network of circRNAs–miRNAs–mRNAs has provided novel insights into the regulatory mechanisms of POCD and revealed potential therapeutic gene targets. |
format | Online Article Text |
id | pubmed-10084838 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-100848382023-04-11 Construction and analysis of circular RNA-associated competing endogenous RNA network in the hippocampus of aged mice for the occurrence of postoperative cognitive dysfunction Zhang, Mingzhu Suo, Zizheng Qu, Yinyin Zheng, Yuxiang Xu, Wenjie Zhang, Bowen Wang, Qiang Wu, Linxin Li, Shuai Cheng, Yaozhong Xiao, Ting Zheng, Hui Ni, Cheng Front Aging Neurosci Aging Neuroscience Circular RNAs are highly stable single-stranded circular RNAs and enriched in the brain. Previous studies showed that circRNAs, as part of competing endogenous RNAs (ceRNAs) network, play an important role in neurodegenerative and psychiatric diseases. However, the mechanism of circRNA-related ceRNA networks in postoperative cognitive dysfunction (POCD) has not been elucidated yet. POCD usually occurs in elderly patients and is characterized by hippocampal dysfunction. Here, aged C57BL/6 mice were subjected to exploratory laparotomy under sevoflurane anesthesia, and this POCD model was verified by Morris water maze test. Whole-transcriptome sequencing was performed on the hippocampus of control group (Con) and surgery group. One hundred and seventy-seven DEcircRNAs, 221 DEmiRNAs and 2,052 DEmRNAs were identified between two groups. A ceRNA network was established with 92 DEcircRNAs having binding sites with 76 DEmiRNAs and 549 target DEmRNAs. In functional enrichment analysis, a pathological pattern of POCD was highlighted in the ceRNA network: Abnormal metabolic process in neural cells, including oxygen metabolism, could promote apoptosis and then affect the synaptic function, which may undermine the neural plasticity and eventually lead to changes in cognitive function and other behavioral patterns. In conclusion, this specific ceRNA network of circRNAs–miRNAs–mRNAs has provided novel insights into the regulatory mechanisms of POCD and revealed potential therapeutic gene targets. Frontiers Media S.A. 2023-03-27 /pmc/articles/PMC10084838/ /pubmed/37051377 http://dx.doi.org/10.3389/fnagi.2023.1098510 Text en Copyright © 2023 Zhang, Suo, Qu, Zheng, Xu, Zhang, Wang, Wu, Li, Cheng, Xiao, Zheng and Ni. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Aging Neuroscience Zhang, Mingzhu Suo, Zizheng Qu, Yinyin Zheng, Yuxiang Xu, Wenjie Zhang, Bowen Wang, Qiang Wu, Linxin Li, Shuai Cheng, Yaozhong Xiao, Ting Zheng, Hui Ni, Cheng Construction and analysis of circular RNA-associated competing endogenous RNA network in the hippocampus of aged mice for the occurrence of postoperative cognitive dysfunction |
title | Construction and analysis of circular RNA-associated competing endogenous RNA network in the hippocampus of aged mice for the occurrence of postoperative cognitive dysfunction |
title_full | Construction and analysis of circular RNA-associated competing endogenous RNA network in the hippocampus of aged mice for the occurrence of postoperative cognitive dysfunction |
title_fullStr | Construction and analysis of circular RNA-associated competing endogenous RNA network in the hippocampus of aged mice for the occurrence of postoperative cognitive dysfunction |
title_full_unstemmed | Construction and analysis of circular RNA-associated competing endogenous RNA network in the hippocampus of aged mice for the occurrence of postoperative cognitive dysfunction |
title_short | Construction and analysis of circular RNA-associated competing endogenous RNA network in the hippocampus of aged mice for the occurrence of postoperative cognitive dysfunction |
title_sort | construction and analysis of circular rna-associated competing endogenous rna network in the hippocampus of aged mice for the occurrence of postoperative cognitive dysfunction |
topic | Aging Neuroscience |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10084838/ https://www.ncbi.nlm.nih.gov/pubmed/37051377 http://dx.doi.org/10.3389/fnagi.2023.1098510 |
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