PyOncoPrint: a python package for plotting OncoPrints

OncoPrint, the plot to visualize an overview of genetic variants in sequencing data, has been widely used in the field of cancer genomics. However, still, there have been no Python libraries capable to generate OncoPrint yet, a big hassle to plot OncoPrints within Python-based genetic variants analy...

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Detalles Bibliográficos
Autores principales: Park, Jeongbin, Paramasivam, Nagarajan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Korea Genome Organization 2023
Materias:
Application Note
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10085746/
https://www.ncbi.nlm.nih.gov/pubmed/37037472
http://dx.doi.org/10.5808/gi.22079
Descripción
Sumario:OncoPrint, the plot to visualize an overview of genetic variants in sequencing data, has been widely used in the field of cancer genomics. However, still, there have been no Python libraries capable to generate OncoPrint yet, a big hassle to plot OncoPrints within Python-based genetic variants analysis pipelines. This paper introduces a new Python package PyOncoPrint, which can be easily used to plot OncoPrints in Python. The package is based on the existing widely used scientific plotting library Matplotlib, the resulting plots are easy to be adjusted for various needs.

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