Cargando…
A Minimum Bayes Factor Based Threshold for Activation Likelihood Estimation
Activation likelihood estimation (ALE) is among the most used algorithms to perform neuroimaging meta-analysis. Since its first implementation, several thresholding procedures had been proposed, all referred to the frequentist framework, returning a rejection criterion for the null hypothesis accord...
Autores principales: | , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Springer US
2023
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10085951/ https://www.ncbi.nlm.nih.gov/pubmed/36976430 http://dx.doi.org/10.1007/s12021-023-09626-6 |
_version_ | 1785022038198452224 |
---|---|
author | Costa, Tommaso Liloia, Donato Cauda, Franco Fox, Peter T. Mutta, Francesca Dalla Duca, Sergio Manuello, Jordi |
author_facet | Costa, Tommaso Liloia, Donato Cauda, Franco Fox, Peter T. Mutta, Francesca Dalla Duca, Sergio Manuello, Jordi |
author_sort | Costa, Tommaso |
collection | PubMed |
description | Activation likelihood estimation (ALE) is among the most used algorithms to perform neuroimaging meta-analysis. Since its first implementation, several thresholding procedures had been proposed, all referred to the frequentist framework, returning a rejection criterion for the null hypothesis according to the critical p-value selected. However, this is not informative in terms of probabilities of the validity of the hypotheses. Here, we describe an innovative thresholding procedure based on the concept of minimum Bayes factor (mBF). The use of the Bayesian framework allows to consider different levels of probability, each of these being equally significant. In order to simplify the translation between the common ALE practice and the proposed approach, we analised six task-fMRI/VBM datasets and determined the mBF values equivalent to the currently recommended frequentist thresholds based on Family Wise Error (FWE). Sensitivity and robustness toward spurious findings were also analyzed. Results showed that the cutoff log(10)(mBF) = 5 is equivalent to the FWE threshold, often referred as voxel-level threshold, while the cutoff log(10)(mBF) = 2 is equivalent to the cluster-level FWE (c-FWE) threshold. However, only in the latter case voxels spatially far from the blobs of effect in the c-FWE ALE map survived. Therefore, when using the Bayesian thresholding the cutoff log(10)(mBF) = 5 should be preferred. However, being in the Bayesian framework, lower values are all equally significant, while suggesting weaker level of force for that hypothesis. Hence, results obtained through less conservative thresholds can be legitimately discussed without losing statistical rigor. The proposed technique adds therefore a powerful tool to the human-brain-mapping field. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s12021-023-09626-6. |
format | Online Article Text |
id | pubmed-10085951 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Springer US |
record_format | MEDLINE/PubMed |
spelling | pubmed-100859512023-04-12 A Minimum Bayes Factor Based Threshold for Activation Likelihood Estimation Costa, Tommaso Liloia, Donato Cauda, Franco Fox, Peter T. Mutta, Francesca Dalla Duca, Sergio Manuello, Jordi Neuroinformatics Research Activation likelihood estimation (ALE) is among the most used algorithms to perform neuroimaging meta-analysis. Since its first implementation, several thresholding procedures had been proposed, all referred to the frequentist framework, returning a rejection criterion for the null hypothesis according to the critical p-value selected. However, this is not informative in terms of probabilities of the validity of the hypotheses. Here, we describe an innovative thresholding procedure based on the concept of minimum Bayes factor (mBF). The use of the Bayesian framework allows to consider different levels of probability, each of these being equally significant. In order to simplify the translation between the common ALE practice and the proposed approach, we analised six task-fMRI/VBM datasets and determined the mBF values equivalent to the currently recommended frequentist thresholds based on Family Wise Error (FWE). Sensitivity and robustness toward spurious findings were also analyzed. Results showed that the cutoff log(10)(mBF) = 5 is equivalent to the FWE threshold, often referred as voxel-level threshold, while the cutoff log(10)(mBF) = 2 is equivalent to the cluster-level FWE (c-FWE) threshold. However, only in the latter case voxels spatially far from the blobs of effect in the c-FWE ALE map survived. Therefore, when using the Bayesian thresholding the cutoff log(10)(mBF) = 5 should be preferred. However, being in the Bayesian framework, lower values are all equally significant, while suggesting weaker level of force for that hypothesis. Hence, results obtained through less conservative thresholds can be legitimately discussed without losing statistical rigor. The proposed technique adds therefore a powerful tool to the human-brain-mapping field. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s12021-023-09626-6. Springer US 2023-03-28 2023 /pmc/articles/PMC10085951/ /pubmed/36976430 http://dx.doi.org/10.1007/s12021-023-09626-6 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/ Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Research Costa, Tommaso Liloia, Donato Cauda, Franco Fox, Peter T. Mutta, Francesca Dalla Duca, Sergio Manuello, Jordi A Minimum Bayes Factor Based Threshold for Activation Likelihood Estimation |
title | A Minimum Bayes Factor Based Threshold for Activation Likelihood Estimation |
title_full | A Minimum Bayes Factor Based Threshold for Activation Likelihood Estimation |
title_fullStr | A Minimum Bayes Factor Based Threshold for Activation Likelihood Estimation |
title_full_unstemmed | A Minimum Bayes Factor Based Threshold for Activation Likelihood Estimation |
title_short | A Minimum Bayes Factor Based Threshold for Activation Likelihood Estimation |
title_sort | minimum bayes factor based threshold for activation likelihood estimation |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10085951/ https://www.ncbi.nlm.nih.gov/pubmed/36976430 http://dx.doi.org/10.1007/s12021-023-09626-6 |
work_keys_str_mv | AT costatommaso aminimumbayesfactorbasedthresholdforactivationlikelihoodestimation AT liloiadonato aminimumbayesfactorbasedthresholdforactivationlikelihoodestimation AT caudafranco aminimumbayesfactorbasedthresholdforactivationlikelihoodestimation AT foxpetert aminimumbayesfactorbasedthresholdforactivationlikelihoodestimation AT muttafrancescadalla aminimumbayesfactorbasedthresholdforactivationlikelihoodestimation AT ducasergio aminimumbayesfactorbasedthresholdforactivationlikelihoodestimation AT manuellojordi aminimumbayesfactorbasedthresholdforactivationlikelihoodestimation AT costatommaso minimumbayesfactorbasedthresholdforactivationlikelihoodestimation AT liloiadonato minimumbayesfactorbasedthresholdforactivationlikelihoodestimation AT caudafranco minimumbayesfactorbasedthresholdforactivationlikelihoodestimation AT foxpetert minimumbayesfactorbasedthresholdforactivationlikelihoodestimation AT muttafrancescadalla minimumbayesfactorbasedthresholdforactivationlikelihoodestimation AT ducasergio minimumbayesfactorbasedthresholdforactivationlikelihoodestimation AT manuellojordi minimumbayesfactorbasedthresholdforactivationlikelihoodestimation |