Cargando…

Deconvolution of the Functional Ultrasound Response in the Mouse Visual Pathway Using Block-Term Decomposition

Functional ultrasound (fUS) indirectly measures brain activity by detecting changes in cerebral blood volume following neural activation. Conventional approaches model such functional neuroimaging data as the convolution between an impulse response, known as the hemodynamic response function (HRF),...

Descripción completa

Detalles Bibliográficos
Autores principales: Erol, Aybüke, Soloukey, Chagajeg, Generowicz, Bastian, van Dorp, Nikki, Koekkoek, Sebastiaan, Kruizinga, Pieter, Hunyadi, Borbála
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer US 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10085969/
https://www.ncbi.nlm.nih.gov/pubmed/36378467
http://dx.doi.org/10.1007/s12021-022-09613-3
_version_ 1785022042458816512
author Erol, Aybüke
Soloukey, Chagajeg
Generowicz, Bastian
van Dorp, Nikki
Koekkoek, Sebastiaan
Kruizinga, Pieter
Hunyadi, Borbála
author_facet Erol, Aybüke
Soloukey, Chagajeg
Generowicz, Bastian
van Dorp, Nikki
Koekkoek, Sebastiaan
Kruizinga, Pieter
Hunyadi, Borbála
author_sort Erol, Aybüke
collection PubMed
description Functional ultrasound (fUS) indirectly measures brain activity by detecting changes in cerebral blood volume following neural activation. Conventional approaches model such functional neuroimaging data as the convolution between an impulse response, known as the hemodynamic response function (HRF), and a binarized representation of the input signal based on the stimulus onsets, the so-called experimental paradigm (EP). However, the EP may not characterize the whole complexity of the activity-inducing signals that evoke the hemodynamic changes. Furthermore, the HRF is known to vary across brain areas and stimuli. To achieve an adaptable framework that can capture such dynamics of the brain function, we model the multivariate fUS time-series as convolutive mixtures and apply block-term decomposition on a set of lagged fUS autocorrelation matrices, revealing both the region-specific HRFs and the source signals that induce the hemodynamic responses. We test our approach on two mouse-based fUS experiments. In the first experiment, we present a single type of visual stimulus to the mouse, and deconvolve the fUS signal measured within the mouse brain’s lateral geniculate nucleus, superior colliculus and visual cortex. We show that the proposed method is able to recover back the time instants at which the stimulus was displayed, and we validate the estimated region-specific HRFs based on prior studies. In the second experiment, we alter the location of the visual stimulus displayed to the mouse, and aim at differentiating the various stimulus locations over time by identifying them as separate sources.
format Online
Article
Text
id pubmed-10085969
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher Springer US
record_format MEDLINE/PubMed
spelling pubmed-100859692023-04-12 Deconvolution of the Functional Ultrasound Response in the Mouse Visual Pathway Using Block-Term Decomposition Erol, Aybüke Soloukey, Chagajeg Generowicz, Bastian van Dorp, Nikki Koekkoek, Sebastiaan Kruizinga, Pieter Hunyadi, Borbála Neuroinformatics Research Functional ultrasound (fUS) indirectly measures brain activity by detecting changes in cerebral blood volume following neural activation. Conventional approaches model such functional neuroimaging data as the convolution between an impulse response, known as the hemodynamic response function (HRF), and a binarized representation of the input signal based on the stimulus onsets, the so-called experimental paradigm (EP). However, the EP may not characterize the whole complexity of the activity-inducing signals that evoke the hemodynamic changes. Furthermore, the HRF is known to vary across brain areas and stimuli. To achieve an adaptable framework that can capture such dynamics of the brain function, we model the multivariate fUS time-series as convolutive mixtures and apply block-term decomposition on a set of lagged fUS autocorrelation matrices, revealing both the region-specific HRFs and the source signals that induce the hemodynamic responses. We test our approach on two mouse-based fUS experiments. In the first experiment, we present a single type of visual stimulus to the mouse, and deconvolve the fUS signal measured within the mouse brain’s lateral geniculate nucleus, superior colliculus and visual cortex. We show that the proposed method is able to recover back the time instants at which the stimulus was displayed, and we validate the estimated region-specific HRFs based on prior studies. In the second experiment, we alter the location of the visual stimulus displayed to the mouse, and aim at differentiating the various stimulus locations over time by identifying them as separate sources. Springer US 2022-11-15 2023 /pmc/articles/PMC10085969/ /pubmed/36378467 http://dx.doi.org/10.1007/s12021-022-09613-3 Text en © The Author(s) 2022, corrected publication 2022 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Research
Erol, Aybüke
Soloukey, Chagajeg
Generowicz, Bastian
van Dorp, Nikki
Koekkoek, Sebastiaan
Kruizinga, Pieter
Hunyadi, Borbála
Deconvolution of the Functional Ultrasound Response in the Mouse Visual Pathway Using Block-Term Decomposition
title Deconvolution of the Functional Ultrasound Response in the Mouse Visual Pathway Using Block-Term Decomposition
title_full Deconvolution of the Functional Ultrasound Response in the Mouse Visual Pathway Using Block-Term Decomposition
title_fullStr Deconvolution of the Functional Ultrasound Response in the Mouse Visual Pathway Using Block-Term Decomposition
title_full_unstemmed Deconvolution of the Functional Ultrasound Response in the Mouse Visual Pathway Using Block-Term Decomposition
title_short Deconvolution of the Functional Ultrasound Response in the Mouse Visual Pathway Using Block-Term Decomposition
title_sort deconvolution of the functional ultrasound response in the mouse visual pathway using block-term decomposition
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10085969/
https://www.ncbi.nlm.nih.gov/pubmed/36378467
http://dx.doi.org/10.1007/s12021-022-09613-3
work_keys_str_mv AT erolaybuke deconvolutionofthefunctionalultrasoundresponseinthemousevisualpathwayusingblocktermdecomposition
AT soloukeychagajeg deconvolutionofthefunctionalultrasoundresponseinthemousevisualpathwayusingblocktermdecomposition
AT generowiczbastian deconvolutionofthefunctionalultrasoundresponseinthemousevisualpathwayusingblocktermdecomposition
AT vandorpnikki deconvolutionofthefunctionalultrasoundresponseinthemousevisualpathwayusingblocktermdecomposition
AT koekkoeksebastiaan deconvolutionofthefunctionalultrasoundresponseinthemousevisualpathwayusingblocktermdecomposition
AT kruizingapieter deconvolutionofthefunctionalultrasoundresponseinthemousevisualpathwayusingblocktermdecomposition
AT hunyadiborbala deconvolutionofthefunctionalultrasoundresponseinthemousevisualpathwayusingblocktermdecomposition