Cargando…

Rapid and fully automated blood vasculature analysis in 3D light-sheet image volumes of different organs

Light-sheet fluorescence microscopy (LSFM) can produce high-resolution tomograms of tissue vasculature with high accuracy. However, data processing and analysis is laborious due to the size of the datasets. Here, we introduce VesselExpress, an automated software that reliably analyzes six characteri...

Descripción completa

Detalles Bibliográficos
Autores principales:	Spangenberg, Philippa, Hagemann, Nina, Squire, Anthony, Förster, Nils, Krauß, Sascha D., Qi, Yachao, Mohamud Yusuf, Ayan, Wang, Jing, Grüneboom, Anika, Kowitz, Lennart, Korste, Sebastian, Totzeck, Matthias, Cibir, Zülal, Tuz, Ali Ata, Singh, Vikramjeet, Siemes, Devon, Struensee, Laura, Engel, Daniel R., Ludewig, Peter, Martins Nascentes Melo, Luiza, Helfrich, Iris, Chen, Jianxu, Gunzer, Matthias, Hermann, Dirk M., Mosig, Axel
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Elsevier 2023
Materias:	Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10088239/ https://www.ncbi.nlm.nih.gov/pubmed/37056368 http://dx.doi.org/10.1016/j.crmeth.2023.100436

Ejemplares similares

Light Sheet Microscopy Using FITC-Albumin Followed by Immunohistochemistry of the Same Rehydrated Brains Reveals Ischemic Brain Injury and Early Microvascular Remodeling
por: Mohamud Yusuf, Ayan, et al.
Publicado: (2021)

Roles of Polymorphonuclear Neutrophils in Ischemic Brain Injury and Post-Ischemic Brain Remodeling
por: Mohamud Yusuf, Ayan, et al.
Publicado: (2022)

Ischemic stroke and concomitant gastrointestinal complications- a fatal combination for patient recovery
por: Tuz, Ali A., et al.
Publicado: (2022)

Anthracycline Therapy Modifies Immune Checkpoint Signaling in the Heart
por: Korste, Sebastian, et al.
Publicado: (2023)

Homozygous Smpd1 deficiency aggravates brain ischemia/ reperfusion injury by mechanisms involving polymorphonuclear neutrophils, whereas heterozygous Smpd1 deficiency protects against mild focal cerebral ischemia
por: Hagemann, Nina, et al.
Publicado: (2020)

Neural precursor cell delivery induces acute post-ischemic cerebroprotection, but fails to promote long-term stroke recovery in hyperlipidemic mice due to mechanisms that include pro-inflammatory responses associated with brain hemorrhages
por: Yin, Dongpei, et al.
Publicado: (2023)

Publisher Correction: Contemporaneous 3D characterization of acute and chronic myocardial I/R injury and response
por: Merz, Simon F., et al.
Publicado: (2019)

Contemporaneous 3D characterization of acute and chronic myocardial I/R injury and response
por: Merz, Simon F., et al.
Publicado: (2019)

Stroke increases the expression of ACE2, the SARS-CoV-2 binding receptor, in murine lungs
por: Singh, Vikramjeet, et al.
Publicado: (2021)

PD1 Deficiency Modifies Cardiac Immunity during Baseline Conditions and in Reperfused Acute Myocardial Infarction
por: Michel, Lars, et al.
Publicado: (2022)

Loss of the Extracellular Matrix Molecule Tenascin-C Leads to Absence of Reactive Gliosis and Promotes Anti-inflammatory Cytokine Expression in an Autoimmune Glaucoma Mouse Model
por: Wiemann, Susanne, et al.
Publicado: (2020)

Distinct Spatio-Temporal Dynamics of Tumor-Associated Neutrophils in Small Tumor Lesions
por: Sody, Simon, et al.
Publicado: (2019)

Cardiac biomarkers for the detection of cardiotoxicity in childhood cancer—a meta‐analysis
por: Michel, Lars, et al.
Publicado: (2020)

Ventricular assist device for a coronavirus disease 2019‐affected heart
por: Rassaf, Tienush, et al.
Publicado: (2020)

Small extracellular vesicles obtained from hypoxic mesenchymal stromal cells have unique characteristics that promote cerebral angiogenesis, brain remodeling and neurological recovery after focal cerebral ischemia in mice
por: Gregorius, Jonas, et al.
Publicado: (2021)

Proteome Analysis of Thyroid Hormone Transporter Mct8/Oatp1c1-Deficient Mice Reveals Novel Dysregulated Target Molecules Involved in Locomotor Function
por: Siemes, Devon, et al.
Publicado: (2023)

CD47 blockade enhances phagocytosis of cardiac cell debris by neutrophils
por: Haj-Yehia, Elias, et al.
Publicado: (2023)

Hepatitis B virus is degraded by autophagosome-lysosome fusion mediated by Rab7 and related components
por: Lin, Yong, et al.
Publicado: (2018)

Postischemic Neuroprotection Associated With Anti-Inflammatory Effects by Mesenchymal Stromal Cell-Derived Small Extracellular Vesicles in Aged Mice
por: Wang, Chen, et al.
Publicado: (2021)

Acid sphingomyelinase deactivation post-ischemia promotes brain angiogenesis and remodeling by small extracellular vesicles
por: Mohamud Yusuf, Ayan, et al.
Publicado: (2022)

Contribution of polymorphonuclear neutrophils in the blood periphery to ischemic brain injury
por: Hermann, Dirk M., et al.
Publicado: (2019)

Modulating Microglial Cells for Promoting Brain Recovery and Repair
por: Hermann, Dirk M., et al.
Publicado: (2021)

Pulsed electron avalanche knife (PEAK) PlasmaBlade™ in pacemaker and defibrillator procedures
por: Kaya, Elif, et al.
Publicado: (2017)

Malaise and fatigue following mitral valve repair: case report
por: Hinrichs, Lena, et al.
Publicado: (2018)

Cardiotoxicity from immune checkpoint inhibitors
por: Michel, Lars, et al.
Publicado: (2019)

Cardiac dysfunction from cancer and cancer therapy: new pathways for the prevention of late cardiotoxicity
por: Michel, Lars, et al.
Publicado: (2021)

Ticagrelor Leads to Statin-Induced Rhabdomyolysis: A Case Report
por: Mrotzek, Simone M., et al.
Publicado: (2017)

Cardiovascular Adverse Events in Patients With Cancer Treated With Bevacizumab: A Meta‐Analysis of More Than 20 000 Patients
por: Totzeck, Matthias, et al.
Publicado: (2017)

Cardiovascular Damage Associated With Chest Irradiation
por: Mrotzek, Simone M., et al.
Publicado: (2020)

Role of polymorphonuclear neutrophils in the reperfused ischemic brain: insights from cell-type-specific immunodepletion and fluorescence microscopy studies
por: Hermann, Dirk M., et al.
Publicado: (2018)

Advances in the In Vivo Molecular Imaging of Invasive Aspergillosis
por: Gunzer, Matthias, et al.
Publicado: (2020)

Environmental Dimensionality Controls the Interaction of Phagocytes with the Pathogenic Fungi Aspergillus fumigatus and Candida albicans
por: Behnsen, Judith, et al.
Publicado: (2007)

Heart failure from cancer therapy: can we prevent it?
por: Totzeck, Matthias, et al.
Publicado: (2019)

An unusual foreign body in the breathing circuit
por: Arora, Vikramjeet
Publicado: (2011)

Crosstalk between Nitrite, Myoglobin and Reactive Oxygen Species to Regulate Vasodilation under Hypoxia
por: Totzeck, Matthias, et al.
Publicado: (2014)

Novel anticoagulants versus vitamin K antagonists for cardioversion of non- valvular atrial fibrillation – a meta-analysis of more than 17000 patients
por: Mincu, Raluca Ileana, et al.
Publicado: (2019)

Cardiotoxicity from chimeric antigen receptor-T cell therapy for advanced malignancies
por: Totzeck, Matthias, et al.
Publicado: (2022)

Direct Observation of Phagocytosis and NET-formation by Neutrophils in Infected Lungs using 2-photon Microscopy
por: Hasenberg, Mike, et al.
Publicado: (2011)

Transiently Reduced PI3K/Akt Activity Drives the Development of Regulatory Function in Antigen-Stimulated Naïve T-Cells
por: Etemire, Eloho, et al.
Publicado: (2013)

Normal vision can compensate for the loss of the circadian clock
por: Schlichting, Matthias, et al.
Publicado: (2015)

Cannot write session to /tmp/vufind_sessions/sess_tin5fspqrb4l1urtg91qjg98ki