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Asymmetric rotations and dimerization driven by normal to modulated phase transition in 4-biphenylcarboxy coupled l-phenylalaninate
Amongst the derivatives of 4-biphenylcarboxylic acid and amino acid esters, the crystal structure of 4-biphenylcarboxy-(l)-phenylalaninate is unusual owing to its monoclinic symmetry within a pseudo-orthorhombic crystal system. The distortion is described by a disparate rotational property around th...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
International Union of Crystallography
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10088479/ https://www.ncbi.nlm.nih.gov/pubmed/36920873 http://dx.doi.org/10.1107/S2052520623000215 |
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author | Dey, Somnath Sasmal, Supriya Mondal, Saikat Kumar, Santosh Chowdhury, Rituparno Sarkar, Debashrita Malla Reddy, C. Peters, Lars Roth, Georg Haldar, Debasish |
author_facet | Dey, Somnath Sasmal, Supriya Mondal, Saikat Kumar, Santosh Chowdhury, Rituparno Sarkar, Debashrita Malla Reddy, C. Peters, Lars Roth, Georg Haldar, Debasish |
author_sort | Dey, Somnath |
collection | PubMed |
description | Amongst the derivatives of 4-biphenylcarboxylic acid and amino acid esters, the crystal structure of 4-biphenylcarboxy-(l)-phenylalaninate is unusual owing to its monoclinic symmetry within a pseudo-orthorhombic crystal system. The distortion is described by a disparate rotational property around the chiral centers (φ(chiral) ≃ −129° and 58°) of the two molecules in the asymmetric unit. Each of these molecules comprises planar biphenyl moieties (φ(biphenyl) = 0°). Using temperature-dependent single-crystal X-ray diffraction experiments we show that the compound undergoes a phase transition below T ∼ 124 K that is characterized by a commensurate modulation wavevector, q = δ(101), δ = ½. The (3+1)-dimensional modulated structure at T = 100 K suggests that the phase transition drives the biphenyl moieties towards noncoplanar conformations with significant variation of internal torsion angle (φ(max) (biphenyl) ≤ 20°). These intramolecular rotations lead to dimerization of the molecular stacks that are described predominantly by distortions in intermolecular tilts (θ(max) ≤ 20°) and small variations in intermolecular distances (Δd (max) ≃ 0.05 Å) between biphenyl molecules. Atypical of modulated structures and superstructures of biphenyl and other polyphenyls, the rotations of individual molecules are asymmetric (Δφ(biphenyl) ≈ 5°) while φ(biphenyl) of one independent molecule is two to four times larger than the other. Crystal-chemical analysis and phase relations in superspace suggest multiple competing factors involving intramolecular steric factors, intermolecular H—C⋯C—H contacts and weak C—H⋯O hydrogen bonds that govern the distinctively unequal torsional properties of the molecules. |
format | Online Article Text |
id | pubmed-10088479 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | International Union of Crystallography |
record_format | MEDLINE/PubMed |
spelling | pubmed-100884792023-04-12 Asymmetric rotations and dimerization driven by normal to modulated phase transition in 4-biphenylcarboxy coupled l-phenylalaninate Dey, Somnath Sasmal, Supriya Mondal, Saikat Kumar, Santosh Chowdhury, Rituparno Sarkar, Debashrita Malla Reddy, C. Peters, Lars Roth, Georg Haldar, Debasish Acta Crystallogr B Struct Sci Cryst Eng Mater Research Papers Amongst the derivatives of 4-biphenylcarboxylic acid and amino acid esters, the crystal structure of 4-biphenylcarboxy-(l)-phenylalaninate is unusual owing to its monoclinic symmetry within a pseudo-orthorhombic crystal system. The distortion is described by a disparate rotational property around the chiral centers (φ(chiral) ≃ −129° and 58°) of the two molecules in the asymmetric unit. Each of these molecules comprises planar biphenyl moieties (φ(biphenyl) = 0°). Using temperature-dependent single-crystal X-ray diffraction experiments we show that the compound undergoes a phase transition below T ∼ 124 K that is characterized by a commensurate modulation wavevector, q = δ(101), δ = ½. The (3+1)-dimensional modulated structure at T = 100 K suggests that the phase transition drives the biphenyl moieties towards noncoplanar conformations with significant variation of internal torsion angle (φ(max) (biphenyl) ≤ 20°). These intramolecular rotations lead to dimerization of the molecular stacks that are described predominantly by distortions in intermolecular tilts (θ(max) ≤ 20°) and small variations in intermolecular distances (Δd (max) ≃ 0.05 Å) between biphenyl molecules. Atypical of modulated structures and superstructures of biphenyl and other polyphenyls, the rotations of individual molecules are asymmetric (Δφ(biphenyl) ≈ 5°) while φ(biphenyl) of one independent molecule is two to four times larger than the other. Crystal-chemical analysis and phase relations in superspace suggest multiple competing factors involving intramolecular steric factors, intermolecular H—C⋯C—H contacts and weak C—H⋯O hydrogen bonds that govern the distinctively unequal torsional properties of the molecules. International Union of Crystallography 2023-03-02 /pmc/articles/PMC10088479/ /pubmed/36920873 http://dx.doi.org/10.1107/S2052520623000215 Text en © Somnath Dey et al. 2023 https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited. |
spellingShingle | Research Papers Dey, Somnath Sasmal, Supriya Mondal, Saikat Kumar, Santosh Chowdhury, Rituparno Sarkar, Debashrita Malla Reddy, C. Peters, Lars Roth, Georg Haldar, Debasish Asymmetric rotations and dimerization driven by normal to modulated phase transition in 4-biphenylcarboxy coupled l-phenylalaninate |
title | Asymmetric rotations and dimerization driven by normal to modulated phase transition in 4-biphenylcarboxy coupled l-phenylalaninate |
title_full | Asymmetric rotations and dimerization driven by normal to modulated phase transition in 4-biphenylcarboxy coupled l-phenylalaninate |
title_fullStr | Asymmetric rotations and dimerization driven by normal to modulated phase transition in 4-biphenylcarboxy coupled l-phenylalaninate |
title_full_unstemmed | Asymmetric rotations and dimerization driven by normal to modulated phase transition in 4-biphenylcarboxy coupled l-phenylalaninate |
title_short | Asymmetric rotations and dimerization driven by normal to modulated phase transition in 4-biphenylcarboxy coupled l-phenylalaninate |
title_sort | asymmetric rotations and dimerization driven by normal to modulated phase transition in 4-biphenylcarboxy coupled l-phenylalaninate |
topic | Research Papers |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10088479/ https://www.ncbi.nlm.nih.gov/pubmed/36920873 http://dx.doi.org/10.1107/S2052520623000215 |
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