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Analysis of diffuse scattering in electron diffraction data for the crystal structure determination of Pigment Orange 13, C(32)H(24)Cl(2)N(8)O(2)

The crystallographic study of two polymorphs of the industrial pyrazolone Pigment Orange 13 (P.O.13) is reported. The crystal structure of the β phase was determined using single-crystal X-ray analysis of a tiny needle. The α phase was investigated using three-dimensional electron diffraction. The e...

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Autores principales: Gorelik, Tatiana E., Bekő, Sàndor L., Teteruk, Jaroslav, Heyse, Winfried, Schmidt, Martin U.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: International Union of Crystallography 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10088482/
https://www.ncbi.nlm.nih.gov/pubmed/36920875
http://dx.doi.org/10.1107/S2052520623000720
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author Gorelik, Tatiana E.
Bekő, Sàndor L.
Teteruk, Jaroslav
Heyse, Winfried
Schmidt, Martin U.
author_facet Gorelik, Tatiana E.
Bekő, Sàndor L.
Teteruk, Jaroslav
Heyse, Winfried
Schmidt, Martin U.
author_sort Gorelik, Tatiana E.
collection PubMed
description The crystallographic study of two polymorphs of the industrial pyrazolone Pigment Orange 13 (P.O.13) is reported. The crystal structure of the β phase was determined using single-crystal X-ray analysis of a tiny needle. The α phase was investigated using three-dimensional electron diffraction. The electron diffraction data contain sharp Bragg reflections and strong diffuse streaks, associated with severe stacking disorder. The structure was solved by careful analysis of the diffuse scattering, and similarities of the unit-cell parameters with the β phase. The structure solution is described in detail and this provides a didactic example of solving molecular crystal structures in the presence of diffuse scattering. Several structural models were constructed and optimized by lattice-energy minimization with dispersion-corrected DFT. A four-layer model was found, which matches the electron diffraction data, including the diffuse scattering, and agrees with X-ray powder data. Additionally, five further phases of P.O.13 are described.
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spelling pubmed-100884822023-04-12 Analysis of diffuse scattering in electron diffraction data for the crystal structure determination of Pigment Orange 13, C(32)H(24)Cl(2)N(8)O(2) Gorelik, Tatiana E. Bekő, Sàndor L. Teteruk, Jaroslav Heyse, Winfried Schmidt, Martin U. Acta Crystallogr B Struct Sci Cryst Eng Mater Research Papers The crystallographic study of two polymorphs of the industrial pyrazolone Pigment Orange 13 (P.O.13) is reported. The crystal structure of the β phase was determined using single-crystal X-ray analysis of a tiny needle. The α phase was investigated using three-dimensional electron diffraction. The electron diffraction data contain sharp Bragg reflections and strong diffuse streaks, associated with severe stacking disorder. The structure was solved by careful analysis of the diffuse scattering, and similarities of the unit-cell parameters with the β phase. The structure solution is described in detail and this provides a didactic example of solving molecular crystal structures in the presence of diffuse scattering. Several structural models were constructed and optimized by lattice-energy minimization with dispersion-corrected DFT. A four-layer model was found, which matches the electron diffraction data, including the diffuse scattering, and agrees with X-ray powder data. Additionally, five further phases of P.O.13 are described. International Union of Crystallography 2023-02-24 /pmc/articles/PMC10088482/ /pubmed/36920875 http://dx.doi.org/10.1107/S2052520623000720 Text en © Tatiana E. Gorelik et al. 2023 https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
spellingShingle Research Papers
Gorelik, Tatiana E.
Bekő, Sàndor L.
Teteruk, Jaroslav
Heyse, Winfried
Schmidt, Martin U.
Analysis of diffuse scattering in electron diffraction data for the crystal structure determination of Pigment Orange 13, C(32)H(24)Cl(2)N(8)O(2)
title Analysis of diffuse scattering in electron diffraction data for the crystal structure determination of Pigment Orange 13, C(32)H(24)Cl(2)N(8)O(2)
title_full Analysis of diffuse scattering in electron diffraction data for the crystal structure determination of Pigment Orange 13, C(32)H(24)Cl(2)N(8)O(2)
title_fullStr Analysis of diffuse scattering in electron diffraction data for the crystal structure determination of Pigment Orange 13, C(32)H(24)Cl(2)N(8)O(2)
title_full_unstemmed Analysis of diffuse scattering in electron diffraction data for the crystal structure determination of Pigment Orange 13, C(32)H(24)Cl(2)N(8)O(2)
title_short Analysis of diffuse scattering in electron diffraction data for the crystal structure determination of Pigment Orange 13, C(32)H(24)Cl(2)N(8)O(2)
title_sort analysis of diffuse scattering in electron diffraction data for the crystal structure determination of pigment orange 13, c(32)h(24)cl(2)n(8)o(2)
topic Research Papers
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10088482/
https://www.ncbi.nlm.nih.gov/pubmed/36920875
http://dx.doi.org/10.1107/S2052520623000720
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