Cargando…

The mitochondrial genome of Dendrobaena tellermanica Perel, 1966 (Annelida: Lumbricidae) and its phylogenetic position

Earthworms are an important ecological group that has a significant impact on soil fauna as well as plant communities. Despite their importance, genetic diversity and phylogeny of earthworms are still insufficiently studied. Most studies on earthworm genetic diversity are currently based on a few mi...

Descripción completa

Detalles Bibliográficos
Autores principales: Shekhovtsov, S.V., Vasiliev, G.V., Latif, R., Poluboyarova, T.V., Peltek, S.E., Rapoport, I.B.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: The Federal Research Center Institute of Cytology and Genetics of Siberian Branch of the Russian Academy of Sciences 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10090101/
https://www.ncbi.nlm.nih.gov/pubmed/37063518
http://dx.doi.org/10.18699/VJGB-23-20
_version_ 1785022899801817088
author Shekhovtsov, S.V.
Vasiliev, G.V.
Latif, R.
Poluboyarova, T.V.
Peltek, S.E.
Rapoport, I.B.
author_facet Shekhovtsov, S.V.
Vasiliev, G.V.
Latif, R.
Poluboyarova, T.V.
Peltek, S.E.
Rapoport, I.B.
author_sort Shekhovtsov, S.V.
collection PubMed
description Earthworms are an important ecological group that has a significant impact on soil fauna as well as plant communities. Despite their importance, genetic diversity and phylogeny of earthworms are still insufficiently studied. Most studies on earthworm genetic diversity are currently based on a few mitochondrial and nuclear genes. Mitochondrial genomes are becoming a promising target for phylogeny reconstruction in earthworms. However, most studies on earthworm mitochondrial genomes were made on West European and East Asian species, with much less sampling from other regions. In this study, we performed sequencing, assembly, and analysis of the mitochondrial genome of Dendrobaena tellermanica Perel, 1966 from the Northern Caucasus. This species was earlier included into D. schmidti (Michaelsen, 1907), a polytypic species with many subspecies. The genome was assembled as a single contig 15,298 bp long which contained a typical gene set: 13 protein-coding genes (three subunits of cytochrome c oxidase, seven subunits of NADH dehydrogenase, two subunits of ATP synthetase, and cytochrome b), 12S and 16S ribosomal RNA genes, and 22 tRNA genes. All genes were located on one DNA strand. The assembled part of the control region, located between the tRNA-Arg and tRNA-His genes, was 727 bp long. The control region contained multiple hairpins, as well as tandem repeats of the AACGCTT monomer. Phylogenetic analysis based on the complete mitochondrial genomes indicated that the genus Dendrobaena occupied the basal position within Lumbricidae. D. tellermanica was a rather distant relative of the cosmopolitan D. octaedra, suggesting high genetic diversity in this genus. D. schmidti turned out to be paraphyletic with respect to D. tellermanica. Since D. schmidti is known to contain very high genetic diversity, these results may indicate that it may be split into several species.
format Online
Article
Text
id pubmed-10090101
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher The Federal Research Center Institute of Cytology and Genetics of Siberian Branch of the Russian Academy of Sciences
record_format MEDLINE/PubMed
spelling pubmed-100901012023-04-13 The mitochondrial genome of Dendrobaena tellermanica Perel, 1966 (Annelida: Lumbricidae) and its phylogenetic position Shekhovtsov, S.V. Vasiliev, G.V. Latif, R. Poluboyarova, T.V. Peltek, S.E. Rapoport, I.B. Vavilovskii Zhurnal Genet Selektsii Original Article Earthworms are an important ecological group that has a significant impact on soil fauna as well as plant communities. Despite their importance, genetic diversity and phylogeny of earthworms are still insufficiently studied. Most studies on earthworm genetic diversity are currently based on a few mitochondrial and nuclear genes. Mitochondrial genomes are becoming a promising target for phylogeny reconstruction in earthworms. However, most studies on earthworm mitochondrial genomes were made on West European and East Asian species, with much less sampling from other regions. In this study, we performed sequencing, assembly, and analysis of the mitochondrial genome of Dendrobaena tellermanica Perel, 1966 from the Northern Caucasus. This species was earlier included into D. schmidti (Michaelsen, 1907), a polytypic species with many subspecies. The genome was assembled as a single contig 15,298 bp long which contained a typical gene set: 13 protein-coding genes (three subunits of cytochrome c oxidase, seven subunits of NADH dehydrogenase, two subunits of ATP synthetase, and cytochrome b), 12S and 16S ribosomal RNA genes, and 22 tRNA genes. All genes were located on one DNA strand. The assembled part of the control region, located between the tRNA-Arg and tRNA-His genes, was 727 bp long. The control region contained multiple hairpins, as well as tandem repeats of the AACGCTT monomer. Phylogenetic analysis based on the complete mitochondrial genomes indicated that the genus Dendrobaena occupied the basal position within Lumbricidae. D. tellermanica was a rather distant relative of the cosmopolitan D. octaedra, suggesting high genetic diversity in this genus. D. schmidti turned out to be paraphyletic with respect to D. tellermanica. Since D. schmidti is known to contain very high genetic diversity, these results may indicate that it may be split into several species. The Federal Research Center Institute of Cytology and Genetics of Siberian Branch of the Russian Academy of Sciences 2023-04 /pmc/articles/PMC10090101/ /pubmed/37063518 http://dx.doi.org/10.18699/VJGB-23-20 Text en Copyright © AUTHORS https://creativecommons.org/licenses/by/2.5/This work is licensed under a Creative Commons Attribution 4.0 License
spellingShingle Original Article
Shekhovtsov, S.V.
Vasiliev, G.V.
Latif, R.
Poluboyarova, T.V.
Peltek, S.E.
Rapoport, I.B.
The mitochondrial genome of Dendrobaena tellermanica Perel, 1966 (Annelida: Lumbricidae) and its phylogenetic position
title The mitochondrial genome of Dendrobaena tellermanica Perel, 1966 (Annelida: Lumbricidae) and its phylogenetic position
title_full The mitochondrial genome of Dendrobaena tellermanica Perel, 1966 (Annelida: Lumbricidae) and its phylogenetic position
title_fullStr The mitochondrial genome of Dendrobaena tellermanica Perel, 1966 (Annelida: Lumbricidae) and its phylogenetic position
title_full_unstemmed The mitochondrial genome of Dendrobaena tellermanica Perel, 1966 (Annelida: Lumbricidae) and its phylogenetic position
title_short The mitochondrial genome of Dendrobaena tellermanica Perel, 1966 (Annelida: Lumbricidae) and its phylogenetic position
title_sort mitochondrial genome of dendrobaena tellermanica perel, 1966 (annelida: lumbricidae) and its phylogenetic position
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10090101/
https://www.ncbi.nlm.nih.gov/pubmed/37063518
http://dx.doi.org/10.18699/VJGB-23-20
work_keys_str_mv AT shekhovtsovsv themitochondrialgenomeofdendrobaenatellermanicaperel1966annelidalumbricidaeanditsphylogeneticposition
AT vasilievgv themitochondrialgenomeofdendrobaenatellermanicaperel1966annelidalumbricidaeanditsphylogeneticposition
AT latifr themitochondrialgenomeofdendrobaenatellermanicaperel1966annelidalumbricidaeanditsphylogeneticposition
AT poluboyarovatv themitochondrialgenomeofdendrobaenatellermanicaperel1966annelidalumbricidaeanditsphylogeneticposition
AT peltekse themitochondrialgenomeofdendrobaenatellermanicaperel1966annelidalumbricidaeanditsphylogeneticposition
AT rapoportib themitochondrialgenomeofdendrobaenatellermanicaperel1966annelidalumbricidaeanditsphylogeneticposition
AT shekhovtsovsv mitochondrialgenomeofdendrobaenatellermanicaperel1966annelidalumbricidaeanditsphylogeneticposition
AT vasilievgv mitochondrialgenomeofdendrobaenatellermanicaperel1966annelidalumbricidaeanditsphylogeneticposition
AT latifr mitochondrialgenomeofdendrobaenatellermanicaperel1966annelidalumbricidaeanditsphylogeneticposition
AT poluboyarovatv mitochondrialgenomeofdendrobaenatellermanicaperel1966annelidalumbricidaeanditsphylogeneticposition
AT peltekse mitochondrialgenomeofdendrobaenatellermanicaperel1966annelidalumbricidaeanditsphylogeneticposition
AT rapoportib mitochondrialgenomeofdendrobaenatellermanicaperel1966annelidalumbricidaeanditsphylogeneticposition