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The thorny complexities of visualization research for clinical settings: A case study from genomics

In this perspective article we discuss a certain type of research on visualization for bioinformatics data, namely, methods targeting clinical use. We argue that in this subarea additional complex challenges come into play, particularly so in genomics. We here describe four such challenge areas, eli...

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Autores principales: Ståhlbom, Emilia, Molin, Jesper, Ynnerman, Anders, Lundström, Claes
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10090312/
https://www.ncbi.nlm.nih.gov/pubmed/37063648
http://dx.doi.org/10.3389/fbinf.2023.1112649
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author Ståhlbom, Emilia
Molin, Jesper
Ynnerman, Anders
Lundström, Claes
author_facet Ståhlbom, Emilia
Molin, Jesper
Ynnerman, Anders
Lundström, Claes
author_sort Ståhlbom, Emilia
collection PubMed
description In this perspective article we discuss a certain type of research on visualization for bioinformatics data, namely, methods targeting clinical use. We argue that in this subarea additional complex challenges come into play, particularly so in genomics. We here describe four such challenge areas, elicited from a domain characterization effort in clinical genomics. We also list opportunities for visualization research to address clinical challenges in genomics that were uncovered in the case study. The findings are shown to have parallels with experiences from the diagnostic imaging domain.
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spelling pubmed-100903122023-04-13 The thorny complexities of visualization research for clinical settings: A case study from genomics Ståhlbom, Emilia Molin, Jesper Ynnerman, Anders Lundström, Claes Front Bioinform Bioinformatics In this perspective article we discuss a certain type of research on visualization for bioinformatics data, namely, methods targeting clinical use. We argue that in this subarea additional complex challenges come into play, particularly so in genomics. We here describe four such challenge areas, elicited from a domain characterization effort in clinical genomics. We also list opportunities for visualization research to address clinical challenges in genomics that were uncovered in the case study. The findings are shown to have parallels with experiences from the diagnostic imaging domain. Frontiers Media S.A. 2023-03-29 /pmc/articles/PMC10090312/ /pubmed/37063648 http://dx.doi.org/10.3389/fbinf.2023.1112649 Text en Copyright © 2023 Ståhlbom, Molin, Ynnerman and Lundström. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Bioinformatics
Ståhlbom, Emilia
Molin, Jesper
Ynnerman, Anders
Lundström, Claes
The thorny complexities of visualization research for clinical settings: A case study from genomics
title The thorny complexities of visualization research for clinical settings: A case study from genomics
title_full The thorny complexities of visualization research for clinical settings: A case study from genomics
title_fullStr The thorny complexities of visualization research for clinical settings: A case study from genomics
title_full_unstemmed The thorny complexities of visualization research for clinical settings: A case study from genomics
title_short The thorny complexities of visualization research for clinical settings: A case study from genomics
title_sort thorny complexities of visualization research for clinical settings: a case study from genomics
topic Bioinformatics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10090312/
https://www.ncbi.nlm.nih.gov/pubmed/37063648
http://dx.doi.org/10.3389/fbinf.2023.1112649
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