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Multimodality MRI radiomics analysis of TP53 mutations in triple negative breast cancer
OBJECTIVES: To explore the value of T1-weighted imaging (T1WI), T2-weighted imaging (T2WI) and diffusion-weighted imaging (DWI) radiomics features reflecting TP53 mutations in patients with triple negative breast cancer (TNBC). STUDY DESIGN: This retrospective study enrolled 91 patients with TNBC wi...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10090452/ https://www.ncbi.nlm.nih.gov/pubmed/37064157 http://dx.doi.org/10.3389/fonc.2023.1153261 |
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author | Sun, Kun Zhu, Hong Chai, Weimin Yan, Fuhua |
author_facet | Sun, Kun Zhu, Hong Chai, Weimin Yan, Fuhua |
author_sort | Sun, Kun |
collection | PubMed |
description | OBJECTIVES: To explore the value of T1-weighted imaging (T1WI), T2-weighted imaging (T2WI) and diffusion-weighted imaging (DWI) radiomics features reflecting TP53 mutations in patients with triple negative breast cancer (TNBC). STUDY DESIGN: This retrospective study enrolled 91 patients with TNBC with TP53 testing (64 patients in the training cohort and 27 patients in the validation cohort). A total of 2832 radiomics features were extracted from the first phase of dynamic contrast-enhanced T1WI, T2WI and ADC maps. Analysis of variance (ANOVA) and the Kruskal-Wallis-test were used for feature selection. Then, linear discriminant analysis (LDA), multilayer perceptron (MLP), logistic regression (LR), LR with LASSO, decision tree (DT), naïve Bayes (NB), random forest (RF), and support vector machine (SVM) models were used for classification. RESULTS: The validation AUCs of the eight classifiers ranged from 0.74 (NB) to 0.85 (SVM). SVM attained the highest AUC (0.85) and diagnostic accuracy (0.82) of all tested models. The top 3 ranking features in the SVM model were T1-square-first order-skewness (coefficient: 1.735), T2-wavelet-LHH-GLCM-joint energy, and T2-wavelet-LHH-GLCM-inverse difference moment (coefficient: -0.654, -0.634). CONCLUSIONS: Radiomics-based analysis with the SVM model is recommended for the detection of TP53 mutations in TNBC. Furthermore, T1WI- and T2WI-related features could be used as noninvasive biomarkers for predicting TP53 mutations. |
format | Online Article Text |
id | pubmed-10090452 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-100904522023-04-13 Multimodality MRI radiomics analysis of TP53 mutations in triple negative breast cancer Sun, Kun Zhu, Hong Chai, Weimin Yan, Fuhua Front Oncol Oncology OBJECTIVES: To explore the value of T1-weighted imaging (T1WI), T2-weighted imaging (T2WI) and diffusion-weighted imaging (DWI) radiomics features reflecting TP53 mutations in patients with triple negative breast cancer (TNBC). STUDY DESIGN: This retrospective study enrolled 91 patients with TNBC with TP53 testing (64 patients in the training cohort and 27 patients in the validation cohort). A total of 2832 radiomics features were extracted from the first phase of dynamic contrast-enhanced T1WI, T2WI and ADC maps. Analysis of variance (ANOVA) and the Kruskal-Wallis-test were used for feature selection. Then, linear discriminant analysis (LDA), multilayer perceptron (MLP), logistic regression (LR), LR with LASSO, decision tree (DT), naïve Bayes (NB), random forest (RF), and support vector machine (SVM) models were used for classification. RESULTS: The validation AUCs of the eight classifiers ranged from 0.74 (NB) to 0.85 (SVM). SVM attained the highest AUC (0.85) and diagnostic accuracy (0.82) of all tested models. The top 3 ranking features in the SVM model were T1-square-first order-skewness (coefficient: 1.735), T2-wavelet-LHH-GLCM-joint energy, and T2-wavelet-LHH-GLCM-inverse difference moment (coefficient: -0.654, -0.634). CONCLUSIONS: Radiomics-based analysis with the SVM model is recommended for the detection of TP53 mutations in TNBC. Furthermore, T1WI- and T2WI-related features could be used as noninvasive biomarkers for predicting TP53 mutations. Frontiers Media S.A. 2023-03-29 /pmc/articles/PMC10090452/ /pubmed/37064157 http://dx.doi.org/10.3389/fonc.2023.1153261 Text en Copyright © 2023 Sun, Zhu, Chai and Yan https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Oncology Sun, Kun Zhu, Hong Chai, Weimin Yan, Fuhua Multimodality MRI radiomics analysis of TP53 mutations in triple negative breast cancer |
title | Multimodality MRI radiomics analysis of TP53 mutations in triple negative breast cancer |
title_full | Multimodality MRI radiomics analysis of TP53 mutations in triple negative breast cancer |
title_fullStr | Multimodality MRI radiomics analysis of TP53 mutations in triple negative breast cancer |
title_full_unstemmed | Multimodality MRI radiomics analysis of TP53 mutations in triple negative breast cancer |
title_short | Multimodality MRI radiomics analysis of TP53 mutations in triple negative breast cancer |
title_sort | multimodality mri radiomics analysis of tp53 mutations in triple negative breast cancer |
topic | Oncology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10090452/ https://www.ncbi.nlm.nih.gov/pubmed/37064157 http://dx.doi.org/10.3389/fonc.2023.1153261 |
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