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Identification of immunodiagnostic blood biomarkers associated with spinal cord injury severity
Blood always shows some immune changes after spinal cord injury (SCI), and detection of such changes in blood may be helpful for diagnosis and treatment of SCI. However, studies to date on blood immune changes after SCI in humans are not comprehensive. Therefore, to obtain the characteristics of blo...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10090698/ https://www.ncbi.nlm.nih.gov/pubmed/37063890 http://dx.doi.org/10.3389/fimmu.2023.1101564 |
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author | Li, Jianfeng Liu, Xizhe Wang, Jianmin Wang, Fuan Zhu, Zhengya Tang, Tao Wang, Jun Zhou, Zhiyu Gao, Manman Liu, Shaoyu |
author_facet | Li, Jianfeng Liu, Xizhe Wang, Jianmin Wang, Fuan Zhu, Zhengya Tang, Tao Wang, Jun Zhou, Zhiyu Gao, Manman Liu, Shaoyu |
author_sort | Li, Jianfeng |
collection | PubMed |
description | Blood always shows some immune changes after spinal cord injury (SCI), and detection of such changes in blood may be helpful for diagnosis and treatment of SCI. However, studies to date on blood immune changes after SCI in humans are not comprehensive. Therefore, to obtain the characteristics of blood immune changes and immunodiagnostic blood biomarkers of SCI and its different grades, a human blood transcriptome sequencing dataset was downloaded and analyzed to obtain differentially expressed immune-related genes (DEIGs), related functions and signaling pathways related to SCI and its various grades. Characteristic biomarkers of SCI and its different grades were identified by using weighted gene coexpression network analysis (WGCNA) and least absolute shrinkage and selection operator (LASSO) logistic regression. Expression of biomarkers was verified through experiments. The area under the curve (AUC) of biomarkers was calculated to evaluate their diagnostic value, and differences in immune cell content were examined. In this study, 17 kinds of immune cells with different contents between the SCI group and healthy control (HC) group were identified, with 7 immune cell types being significantly increased. Differences in the content of immune cells between different grades of SCI and the HC group were also discovered. DEIGs were identified, with alteration in some immune-related signaling pathways, vascular endothelial growth factor signaling pathways, and axon guidance signaling pathways. The SCI biomarkers identified and those of American Spinal Injury Society Impairment Scale (AIS) A and AIS D of SCI have certain diagnostic sensitivity. Analysis of the correlation of immune cells and biomarkers showed that biomarkers of SCI, AIS A grade and AIS D grade correlated positively or negatively with some immune cells. CKLF, EDNRB, FCER1G, SORT1, and TNFSF13B can be used as immune biomarkers for SCI. Additionally, GDF11and HSPA1L can be used as biomarkers of SCI AIS A grade; PRKCA and CMTM2 can be used as biomarkers of the SCI AIS D grade. Detecting expression of these putative biomarkers and changes in related immune cells may be helpful for predicting the severity of SCI. |
format | Online Article Text |
id | pubmed-10090698 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-100906982023-04-13 Identification of immunodiagnostic blood biomarkers associated with spinal cord injury severity Li, Jianfeng Liu, Xizhe Wang, Jianmin Wang, Fuan Zhu, Zhengya Tang, Tao Wang, Jun Zhou, Zhiyu Gao, Manman Liu, Shaoyu Front Immunol Immunology Blood always shows some immune changes after spinal cord injury (SCI), and detection of such changes in blood may be helpful for diagnosis and treatment of SCI. However, studies to date on blood immune changes after SCI in humans are not comprehensive. Therefore, to obtain the characteristics of blood immune changes and immunodiagnostic blood biomarkers of SCI and its different grades, a human blood transcriptome sequencing dataset was downloaded and analyzed to obtain differentially expressed immune-related genes (DEIGs), related functions and signaling pathways related to SCI and its various grades. Characteristic biomarkers of SCI and its different grades were identified by using weighted gene coexpression network analysis (WGCNA) and least absolute shrinkage and selection operator (LASSO) logistic regression. Expression of biomarkers was verified through experiments. The area under the curve (AUC) of biomarkers was calculated to evaluate their diagnostic value, and differences in immune cell content were examined. In this study, 17 kinds of immune cells with different contents between the SCI group and healthy control (HC) group were identified, with 7 immune cell types being significantly increased. Differences in the content of immune cells between different grades of SCI and the HC group were also discovered. DEIGs were identified, with alteration in some immune-related signaling pathways, vascular endothelial growth factor signaling pathways, and axon guidance signaling pathways. The SCI biomarkers identified and those of American Spinal Injury Society Impairment Scale (AIS) A and AIS D of SCI have certain diagnostic sensitivity. Analysis of the correlation of immune cells and biomarkers showed that biomarkers of SCI, AIS A grade and AIS D grade correlated positively or negatively with some immune cells. CKLF, EDNRB, FCER1G, SORT1, and TNFSF13B can be used as immune biomarkers for SCI. Additionally, GDF11and HSPA1L can be used as biomarkers of SCI AIS A grade; PRKCA and CMTM2 can be used as biomarkers of the SCI AIS D grade. Detecting expression of these putative biomarkers and changes in related immune cells may be helpful for predicting the severity of SCI. Frontiers Media S.A. 2023-03-29 /pmc/articles/PMC10090698/ /pubmed/37063890 http://dx.doi.org/10.3389/fimmu.2023.1101564 Text en Copyright © 2023 Li, Liu, Wang, Wang, Zhu, Tang, Wang, Zhou, Gao and Liu https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Immunology Li, Jianfeng Liu, Xizhe Wang, Jianmin Wang, Fuan Zhu, Zhengya Tang, Tao Wang, Jun Zhou, Zhiyu Gao, Manman Liu, Shaoyu Identification of immunodiagnostic blood biomarkers associated with spinal cord injury severity |
title | Identification of immunodiagnostic blood biomarkers associated with spinal cord injury severity |
title_full | Identification of immunodiagnostic blood biomarkers associated with spinal cord injury severity |
title_fullStr | Identification of immunodiagnostic blood biomarkers associated with spinal cord injury severity |
title_full_unstemmed | Identification of immunodiagnostic blood biomarkers associated with spinal cord injury severity |
title_short | Identification of immunodiagnostic blood biomarkers associated with spinal cord injury severity |
title_sort | identification of immunodiagnostic blood biomarkers associated with spinal cord injury severity |
topic | Immunology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10090698/ https://www.ncbi.nlm.nih.gov/pubmed/37063890 http://dx.doi.org/10.3389/fimmu.2023.1101564 |
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