Cargando…

CycPeptMPDB: A Comprehensive Database of Membrane Permeability of Cyclic Peptides

[Image: see text] Recently, cyclic peptides have been considered breakthrough drugs because they can interact with “undruggable” targets such as intracellular protein–protein interactions. Membrane permeability is an essential indicator of oral bioavailability and intracellular targeting, and the de...

Descripción completa

Detalles Bibliográficos
Autores principales:	Li, Jianan, Yanagisawa, Keisuke, Sugita, Masatake, Fujie, Takuya, Ohue, Masahito, Akiyama, Yutaka
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	American Chemical Society 2023
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10091415/ https://www.ncbi.nlm.nih.gov/pubmed/36930969 http://dx.doi.org/10.1021/acs.jcim.2c01573

Ejemplares similares

Lipid Composition Is Critical for Accurate Membrane Permeability Prediction of Cyclic Peptides by Molecular Dynamics Simulations
por: Sugita, Masatake, et al.
Publicado: (2022)

Plasma protein binding prediction focusing on residue-level features and circularity of cyclic peptides by deep learning
por: Li, Jianan, et al.
Publicado: (2021)

MPDB: Molecular Pathways Brain Database
por: Vigneshwari, Gopal Madhana, et al.
Publicado: (2016)

MPDB 1.0: a medicinal plant database of Bangladesh
por: Ashraf, Mohammad Arif, et al.
Publicado: (2014)

MPdb: Melghat Plant databank
por: Atre1, Nitin M, et al.
Publicado: (2022)

MEGADOCK-Web: an integrated database of high-throughput structure-based protein-protein interaction predictions
por: Hayashi, Takanori, et al.
Publicado: (2018)

Computational prediction of plasma protein binding of cyclic peptides from small molecule experimental data using sparse modeling techniques
por: Tajimi, Takashi, et al.
Publicado: (2018)

MPDB 2.0: a large scale and integrated medicinal plant database of Bangladesh
por: Hussain, Nazmul, et al.
Publicado: (2021)

Effective Protein–Ligand Docking Strategy via Fragment Reuse and a Proof-of-Concept Implementation
por: Yanagisawa, Keisuke, et al.
Publicado: (2022)

CycADS: an annotation database system to ease the development and update of BioCyc databases
por: Vellozo, Augusto F., et al.
Publicado: (2011)

QEX: target-specific druglikeness filter enhances ligand-based virtual screening
por: Mochizuki, Masahiro, et al.
Publicado: (2018)

The EcoCyc Database in 2021
por: Keseler, Ingrid M., et al.
Publicado: (2021)

The MetaCyc Database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases
por: Caspi, Ron, et al.
Publicado: (2008)

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases
por: Caspi, Ron, et al.
Publicado: (2012)

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases
por: Caspi, Ron, et al.
Publicado: (2010)

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases
por: Caspi, Ron, et al.
Publicado: (2016)

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases
por: Caspi, Ron, et al.
Publicado: (2014)

ArthropodaCyc: a CycADS powered collection of BioCyc databases to analyse and compare metabolism of arthropods
por: Baa-Puyoulet, Patrice, et al.
Publicado: (2016)

Improved Large-Scale Homology Search by Two-Step Seed Search Using Multiple Reduced Amino Acid Alphabets
por: Takabatake, Kazuki, et al.
Publicado: (2021)

Spresso: an ultrafast compound pre-screening method based on compound decomposition
por: Yanagisawa, Keisuke, et al.
Publicado: (2017)

USP18 Sensitivity of Peptide Transporters PEPT1 and PEPT2
por: Warsi, Jamshed, et al.
Publicado: (2015)

The MetaCyc database of metabolic pathways and enzymes
por: Caspi, Ron, et al.
Publicado: (2018)

Update notifications for the BioCyc collection of databases
por: Paley, Suzanne, et al.
Publicado: (2017)

Amide-to-ester substitution as a stable alternative to N-methylation for increasing membrane permeability in cyclic peptides
por: Hosono, Yuki, et al.
Publicado: (2023)

Sequencing by Cyclic Ligation and Cleavage (CycLiC) directly on a microarray captured template
por: Mir, Kalim U., et al.
Publicado: (2009)

The Listeria monocytogenes strain 10403S BioCyc database
por: Orsi, Renato H., et al.
Publicado: (2015)

Evaluation of PepT1 (SLC15A1) Substrate Characteristics of Therapeutic Cyclic Peptides
por: Bajraktari-Sylejmani, Gzona, et al.
Publicado: (2022)

MetaCyc: a multiorganism database of metabolic pathways and enzymes
por: Caspi, Ron, et al.
Publicado: (2006)

EcoCyc: a comprehensive database resource for Escherichia coli
por: Keseler, Ingrid M., et al.
Publicado: (2005)

EcoCyc: a comprehensive database of Escherichia coli biology
por: Keseler, Ingrid M., et al.
Publicado: (2011)

LeishCyc: a biochemical pathways database for Leishmania major
por: Doyle, Maria A, et al.
Publicado: (2009)

A systematic comparison of the MetaCyc and KEGG pathway databases
por: Altman, Tomer, et al.
Publicado: (2013)

EcoCyc: fusing model organism databases with systems biology
por: Keseler, Ingrid M., et al.
Publicado: (2013)

NRLMFβ: Beta-distribution-rescored neighborhood regularized logistic matrix factorization for improving the performance of drug–target interaction prediction
por: Ban, Tomohiro, et al.
Publicado: (2019)

Multidomain protein structure prediction using information about residues interacting on multimeric protein interfaces
por: Matsuno, Shumpei, et al.
Publicado: (2020)

Design of Cyclic Peptides Targeting Protein–Protein Interactions Using AlphaFold
por: Kosugi, Takatsugu, et al.
Publicado: (2023)

Standard method for performing positron emission particle tracking (PEPT) measurements of froth flotation at PEPT Cape Town
por: Cole, Katie, et al.
Publicado: (2022)

Peptide transporter structure reveals binding and action mechanism of a potent PEPT1 and PEPT2 inhibitor
por: Stauffer, Mirko, et al.
Publicado: (2022)

Expansion of the BioCyc collection of pathway/genome databases to 160 genomes
por: Karp, Peter D., et al.
Publicado: (2005)

MouseCyc: a curated biochemical pathways database for the laboratory mouse
por: Evsikov, Alexei V, et al.
Publicado: (2009)

Cannot write session to /tmp/vufind_sessions/sess_v14g7gihfcjddrbpejb9gqi3qo