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OpticalBERT and OpticalTable-SQA: Text- and Table-Based Language Models for the Optical-Materials Domain

[Image: see text] Text mining in the optical-materials domain is becoming increasingly important as the number of scientific publications in this area grows rapidly. Language models such as Bidirectional Encoder Representations from Transformers (BERT) have opened up a new era and brought a signific...

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Autores principales: Zhao, Jiuyang, Huang, Shu, Cole, Jacqueline M.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2023
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10091421/
https://www.ncbi.nlm.nih.gov/pubmed/36940385
http://dx.doi.org/10.1021/acs.jcim.2c01259
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author Zhao, Jiuyang
Huang, Shu
Cole, Jacqueline M.
author_facet Zhao, Jiuyang
Huang, Shu
Cole, Jacqueline M.
author_sort Zhao, Jiuyang
collection PubMed
description [Image: see text] Text mining in the optical-materials domain is becoming increasingly important as the number of scientific publications in this area grows rapidly. Language models such as Bidirectional Encoder Representations from Transformers (BERT) have opened up a new era and brought a significant boost to state-of-the-art natural-language-processing (NLP) tasks. In this paper, we present two “materials-aware” text-based language models for optical research, OpticalBERT and OpticalPureBERT, which are trained on a large corpus of scientific literature in the optical-materials domain. These two models outperform BERT and previous state-of-the-art models in a variety of text-mining tasks about optical materials. We also release the first “materials-aware” table-based language model, OpticalTable-SQA. This is a querying facility that solicits answers to questions about optical materials using tabular information that pertains to this scientific domain. The OpticalTable-SQA model was realized by fine-tuning the Tapas-SQA model using a manually annotated OpticalTableQA data set which was curated specifically for this work. While preserving its sequential question-answering performance on general tables, the OpticalTable-SQA model significantly outperforms Tapas-SQA on optical-materials-related tables. All models and data sets are available to the optical-materials-science community.
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spelling pubmed-100914212023-04-13 OpticalBERT and OpticalTable-SQA: Text- and Table-Based Language Models for the Optical-Materials Domain Zhao, Jiuyang Huang, Shu Cole, Jacqueline M. J Chem Inf Model [Image: see text] Text mining in the optical-materials domain is becoming increasingly important as the number of scientific publications in this area grows rapidly. Language models such as Bidirectional Encoder Representations from Transformers (BERT) have opened up a new era and brought a significant boost to state-of-the-art natural-language-processing (NLP) tasks. In this paper, we present two “materials-aware” text-based language models for optical research, OpticalBERT and OpticalPureBERT, which are trained on a large corpus of scientific literature in the optical-materials domain. These two models outperform BERT and previous state-of-the-art models in a variety of text-mining tasks about optical materials. We also release the first “materials-aware” table-based language model, OpticalTable-SQA. This is a querying facility that solicits answers to questions about optical materials using tabular information that pertains to this scientific domain. The OpticalTable-SQA model was realized by fine-tuning the Tapas-SQA model using a manually annotated OpticalTableQA data set which was curated specifically for this work. While preserving its sequential question-answering performance on general tables, the OpticalTable-SQA model significantly outperforms Tapas-SQA on optical-materials-related tables. All models and data sets are available to the optical-materials-science community. American Chemical Society 2023-03-20 /pmc/articles/PMC10091421/ /pubmed/36940385 http://dx.doi.org/10.1021/acs.jcim.2c01259 Text en © 2023 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by/4.0/Permits the broadest form of re-use including for commercial purposes, provided that author attribution and integrity are maintained (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Zhao, Jiuyang
Huang, Shu
Cole, Jacqueline M.
OpticalBERT and OpticalTable-SQA: Text- and Table-Based Language Models for the Optical-Materials Domain
title OpticalBERT and OpticalTable-SQA: Text- and Table-Based Language Models for the Optical-Materials Domain
title_full OpticalBERT and OpticalTable-SQA: Text- and Table-Based Language Models for the Optical-Materials Domain
title_fullStr OpticalBERT and OpticalTable-SQA: Text- and Table-Based Language Models for the Optical-Materials Domain
title_full_unstemmed OpticalBERT and OpticalTable-SQA: Text- and Table-Based Language Models for the Optical-Materials Domain
title_short OpticalBERT and OpticalTable-SQA: Text- and Table-Based Language Models for the Optical-Materials Domain
title_sort opticalbert and opticaltable-sqa: text- and table-based language models for the optical-materials domain
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10091421/
https://www.ncbi.nlm.nih.gov/pubmed/36940385
http://dx.doi.org/10.1021/acs.jcim.2c01259
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