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Computational Insights into the Catalytic Mechanism of Is‐PETase: An Enzyme Capable of Degrading Poly(ethylene) Terephthalate
Is‐PETase has become an enzyme of significant interest due to its ability to catalyse the degradation of polyethylene terephthalate (PET) at mesophilic temperatures. We performed hybrid quantum mechanics and molecular mechanics (QM/MM) at the DSD‐PBEP86‐D3/ma‐def2‐TZVP/CHARMM27//rev‐PBE‐D3/dev2‐SVP/...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10091965/ https://www.ncbi.nlm.nih.gov/pubmed/36112344 http://dx.doi.org/10.1002/chem.202201728 |
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author | Shrimpton‐Phoenix, Eugene Mitchell, John B. O. Bühl, Michael |
author_facet | Shrimpton‐Phoenix, Eugene Mitchell, John B. O. Bühl, Michael |
author_sort | Shrimpton‐Phoenix, Eugene |
collection | PubMed |
description | Is‐PETase has become an enzyme of significant interest due to its ability to catalyse the degradation of polyethylene terephthalate (PET) at mesophilic temperatures. We performed hybrid quantum mechanics and molecular mechanics (QM/MM) at the DSD‐PBEP86‐D3/ma‐def2‐TZVP/CHARMM27//rev‐PBE‐D3/dev2‐SVP/CHARMM level to calculate the energy profile for the degradation of a suitable PET model by this enzyme. Very low overall barriers are computed for serine protease‐type hydrolysis steps (as low as 34.1 kJ mol(−1)). Spontaneous deprotonation of the final product, terephthalic acid, with a high computed driving force indicates that product release could be rate limiting. |
format | Online Article Text |
id | pubmed-10091965 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-100919652023-04-13 Computational Insights into the Catalytic Mechanism of Is‐PETase: An Enzyme Capable of Degrading Poly(ethylene) Terephthalate Shrimpton‐Phoenix, Eugene Mitchell, John B. O. Bühl, Michael Chemistry Research Articles Is‐PETase has become an enzyme of significant interest due to its ability to catalyse the degradation of polyethylene terephthalate (PET) at mesophilic temperatures. We performed hybrid quantum mechanics and molecular mechanics (QM/MM) at the DSD‐PBEP86‐D3/ma‐def2‐TZVP/CHARMM27//rev‐PBE‐D3/dev2‐SVP/CHARMM level to calculate the energy profile for the degradation of a suitable PET model by this enzyme. Very low overall barriers are computed for serine protease‐type hydrolysis steps (as low as 34.1 kJ mol(−1)). Spontaneous deprotonation of the final product, terephthalic acid, with a high computed driving force indicates that product release could be rate limiting. John Wiley and Sons Inc. 2022-10-25 2022-12-15 /pmc/articles/PMC10091965/ /pubmed/36112344 http://dx.doi.org/10.1002/chem.202201728 Text en © 2022 The Authors. Chemistry - A European Journal published by Wiley-VCH GmbH https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Articles Shrimpton‐Phoenix, Eugene Mitchell, John B. O. Bühl, Michael Computational Insights into the Catalytic Mechanism of Is‐PETase: An Enzyme Capable of Degrading Poly(ethylene) Terephthalate |
title | Computational Insights into the Catalytic Mechanism of Is‐PETase: An Enzyme Capable of Degrading Poly(ethylene) Terephthalate |
title_full | Computational Insights into the Catalytic Mechanism of Is‐PETase: An Enzyme Capable of Degrading Poly(ethylene) Terephthalate |
title_fullStr | Computational Insights into the Catalytic Mechanism of Is‐PETase: An Enzyme Capable of Degrading Poly(ethylene) Terephthalate |
title_full_unstemmed | Computational Insights into the Catalytic Mechanism of Is‐PETase: An Enzyme Capable of Degrading Poly(ethylene) Terephthalate |
title_short | Computational Insights into the Catalytic Mechanism of Is‐PETase: An Enzyme Capable of Degrading Poly(ethylene) Terephthalate |
title_sort | computational insights into the catalytic mechanism of is‐petase: an enzyme capable of degrading poly(ethylene) terephthalate |
topic | Research Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10091965/ https://www.ncbi.nlm.nih.gov/pubmed/36112344 http://dx.doi.org/10.1002/chem.202201728 |
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