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A reinforcement learning‐based hybrid modeling framework for bioprocess kinetics identification

Constructing predictive models to simulate complex bioprocess dynamics, particularly time‐varying (i.e., parameters varying over time) and history‐dependent (i.e., current kinetics dependent on historical culture conditions) behavior, has been a longstanding research challenge. Current advances in h...

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Autores principales: Mowbray, Max R., Wu, Chufan, Rogers, Alexander W., Rio‐Chanona, Ehecatl A. Del, Zhang, Dongda
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10092184/
https://www.ncbi.nlm.nih.gov/pubmed/36225098
http://dx.doi.org/10.1002/bit.28262
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author Mowbray, Max R.
Wu, Chufan
Rogers, Alexander W.
Rio‐Chanona, Ehecatl A. Del
Zhang, Dongda
author_facet Mowbray, Max R.
Wu, Chufan
Rogers, Alexander W.
Rio‐Chanona, Ehecatl A. Del
Zhang, Dongda
author_sort Mowbray, Max R.
collection PubMed
description Constructing predictive models to simulate complex bioprocess dynamics, particularly time‐varying (i.e., parameters varying over time) and history‐dependent (i.e., current kinetics dependent on historical culture conditions) behavior, has been a longstanding research challenge. Current advances in hybrid modeling offer a solution to this by integrating kinetic models with data‐driven techniques. This article proposes a novel two‐step framework: first (i) speculate and combine several possible kinetic model structures sourced from process and phenomenological knowledge, then (ii) identify the most likely kinetic model structure and its parameter values using model‐free Reinforcement Learning (RL). Specifically, Step 1 collates feasible history‐dependent model structures, then Step 2 uses RL to simultaneously identify the correct model structure and the time‐varying parameter trajectories. To demonstrate the performance of this framework, a range of in‐silico case studies were carried out. The results show that the proposed framework can efficiently construct high‐fidelity models to quantify both time‐varying and history‐dependent kinetic behaviors while minimizing the risks of over‐parametrization and over‐fitting. Finally, the primary advantages of the proposed framework and its limitation were thoroughly discussed in comparison to other existing hybrid modeling and model structure identification techniques, highlighting the potential of this framework for general bioprocess modeling.
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spelling pubmed-100921842023-04-13 A reinforcement learning‐based hybrid modeling framework for bioprocess kinetics identification Mowbray, Max R. Wu, Chufan Rogers, Alexander W. Rio‐Chanona, Ehecatl A. Del Zhang, Dongda Biotechnol Bioeng ARTICLES Constructing predictive models to simulate complex bioprocess dynamics, particularly time‐varying (i.e., parameters varying over time) and history‐dependent (i.e., current kinetics dependent on historical culture conditions) behavior, has been a longstanding research challenge. Current advances in hybrid modeling offer a solution to this by integrating kinetic models with data‐driven techniques. This article proposes a novel two‐step framework: first (i) speculate and combine several possible kinetic model structures sourced from process and phenomenological knowledge, then (ii) identify the most likely kinetic model structure and its parameter values using model‐free Reinforcement Learning (RL). Specifically, Step 1 collates feasible history‐dependent model structures, then Step 2 uses RL to simultaneously identify the correct model structure and the time‐varying parameter trajectories. To demonstrate the performance of this framework, a range of in‐silico case studies were carried out. The results show that the proposed framework can efficiently construct high‐fidelity models to quantify both time‐varying and history‐dependent kinetic behaviors while minimizing the risks of over‐parametrization and over‐fitting. Finally, the primary advantages of the proposed framework and its limitation were thoroughly discussed in comparison to other existing hybrid modeling and model structure identification techniques, highlighting the potential of this framework for general bioprocess modeling. John Wiley and Sons Inc. 2022-10-26 2023-01 /pmc/articles/PMC10092184/ /pubmed/36225098 http://dx.doi.org/10.1002/bit.28262 Text en © 2022 The Authors. Biotechnology and Bioengineering published by Wiley Periodicals LLC. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle ARTICLES
Mowbray, Max R.
Wu, Chufan
Rogers, Alexander W.
Rio‐Chanona, Ehecatl A. Del
Zhang, Dongda
A reinforcement learning‐based hybrid modeling framework for bioprocess kinetics identification
title A reinforcement learning‐based hybrid modeling framework for bioprocess kinetics identification
title_full A reinforcement learning‐based hybrid modeling framework for bioprocess kinetics identification
title_fullStr A reinforcement learning‐based hybrid modeling framework for bioprocess kinetics identification
title_full_unstemmed A reinforcement learning‐based hybrid modeling framework for bioprocess kinetics identification
title_short A reinforcement learning‐based hybrid modeling framework for bioprocess kinetics identification
title_sort reinforcement learning‐based hybrid modeling framework for bioprocess kinetics identification
topic ARTICLES
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10092184/
https://www.ncbi.nlm.nih.gov/pubmed/36225098
http://dx.doi.org/10.1002/bit.28262
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