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Draft genomes of halophilic Archaea strains isolated from brines of the Carpathian Foreland, Poland

Halophilic Archaea are a unique group of microorganisms living in saline environments. They constitute a complex group whose biodiversity has not been thoroughly studied. Here, we report three draft genomes of halophilic Archaea isolated from brines, representing the genera of Halorubrum, Halopenitu...

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Autores principales: Lach, Jakub, Strapagiel, Dominik, Matera-Witkiewicz, Agnieszka, Stączek, Paweł
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Ivyspring International Publisher 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10093198/
https://www.ncbi.nlm.nih.gov/pubmed/37066119
http://dx.doi.org/10.7150/jgen.82493
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author Lach, Jakub
Strapagiel, Dominik
Matera-Witkiewicz, Agnieszka
Stączek, Paweł
author_facet Lach, Jakub
Strapagiel, Dominik
Matera-Witkiewicz, Agnieszka
Stączek, Paweł
author_sort Lach, Jakub
collection PubMed
description Halophilic Archaea are a unique group of microorganisms living in saline environments. They constitute a complex group whose biodiversity has not been thoroughly studied. Here, we report three draft genomes of halophilic Archaea isolated from brines, representing the genera of Halorubrum, Halopenitus, and Haloarcula. Two of these strains, Boch-26 and POP-27, were identified as members of the genera Halorubrum and Halopenitus, respectively. However, they could not be assigned to any known species because of the excessive difference in genome sequences between these strains and any other described genomes. In contrast, the third strain, Boch-26, was identified as Haloarcula hispanica. Genome lengths of these isolates ranged from 2.7 Mbp to 3.0 Mbp, and GC content was in the 63.77%-68.77% range. Moreover, functional analysis revealed biosynthetic gene clusters (BGCs) related to terpenes production in all analysed genomes and one BGC for RRE (RiPP recognition element)-dependent RiPP (post-translationally modified peptides) biosynthesis. Moreover, the obtained results enhanced the knowledge about the salt mines microbiota biodiversity as a poorly explored environment so far.
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spelling pubmed-100931982023-04-13 Draft genomes of halophilic Archaea strains isolated from brines of the Carpathian Foreland, Poland Lach, Jakub Strapagiel, Dominik Matera-Witkiewicz, Agnieszka Stączek, Paweł J Genomics Research Paper Halophilic Archaea are a unique group of microorganisms living in saline environments. They constitute a complex group whose biodiversity has not been thoroughly studied. Here, we report three draft genomes of halophilic Archaea isolated from brines, representing the genera of Halorubrum, Halopenitus, and Haloarcula. Two of these strains, Boch-26 and POP-27, were identified as members of the genera Halorubrum and Halopenitus, respectively. However, they could not be assigned to any known species because of the excessive difference in genome sequences between these strains and any other described genomes. In contrast, the third strain, Boch-26, was identified as Haloarcula hispanica. Genome lengths of these isolates ranged from 2.7 Mbp to 3.0 Mbp, and GC content was in the 63.77%-68.77% range. Moreover, functional analysis revealed biosynthetic gene clusters (BGCs) related to terpenes production in all analysed genomes and one BGC for RRE (RiPP recognition element)-dependent RiPP (post-translationally modified peptides) biosynthesis. Moreover, the obtained results enhanced the knowledge about the salt mines microbiota biodiversity as a poorly explored environment so far. Ivyspring International Publisher 2023-04-10 /pmc/articles/PMC10093198/ /pubmed/37066119 http://dx.doi.org/10.7150/jgen.82493 Text en © The author(s) https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/). See http://ivyspring.com/terms for full terms and conditions.
spellingShingle Research Paper
Lach, Jakub
Strapagiel, Dominik
Matera-Witkiewicz, Agnieszka
Stączek, Paweł
Draft genomes of halophilic Archaea strains isolated from brines of the Carpathian Foreland, Poland
title Draft genomes of halophilic Archaea strains isolated from brines of the Carpathian Foreland, Poland
title_full Draft genomes of halophilic Archaea strains isolated from brines of the Carpathian Foreland, Poland
title_fullStr Draft genomes of halophilic Archaea strains isolated from brines of the Carpathian Foreland, Poland
title_full_unstemmed Draft genomes of halophilic Archaea strains isolated from brines of the Carpathian Foreland, Poland
title_short Draft genomes of halophilic Archaea strains isolated from brines of the Carpathian Foreland, Poland
title_sort draft genomes of halophilic archaea strains isolated from brines of the carpathian foreland, poland
topic Research Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10093198/
https://www.ncbi.nlm.nih.gov/pubmed/37066119
http://dx.doi.org/10.7150/jgen.82493
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