Cargando…

Recent Theoretical Insights into the Oxidative Degradation of Biopolymers and Plastics by Metalloenzymes †

Molecular modeling techniques have become indispensable in many fields of molecular sciences in which the details related to mechanisms and reactivity need to be studied at an atomistic level. This review article provides a collection of computational modeling works on a topic of enormous interest a...

Descripción completa

Detalles Bibliográficos
Autores principales: Rovaletti, Anna, De Gioia, Luca, Fantucci, Piercarlo, Greco, Claudio, Vertemara, Jacopo, Zampella, Giuseppe, Arrigoni, Federica, Bertini, Luca
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10094197/
https://www.ncbi.nlm.nih.gov/pubmed/37047341
http://dx.doi.org/10.3390/ijms24076368
_version_ 1785023781347000320
author Rovaletti, Anna
De Gioia, Luca
Fantucci, Piercarlo
Greco, Claudio
Vertemara, Jacopo
Zampella, Giuseppe
Arrigoni, Federica
Bertini, Luca
author_facet Rovaletti, Anna
De Gioia, Luca
Fantucci, Piercarlo
Greco, Claudio
Vertemara, Jacopo
Zampella, Giuseppe
Arrigoni, Federica
Bertini, Luca
author_sort Rovaletti, Anna
collection PubMed
description Molecular modeling techniques have become indispensable in many fields of molecular sciences in which the details related to mechanisms and reactivity need to be studied at an atomistic level. This review article provides a collection of computational modeling works on a topic of enormous interest and urgent relevance: the properties of metalloenzymes involved in the degradation and valorization of natural biopolymers and synthetic plastics on the basis of both circular biofuel production and bioremediation strategies. In particular, we will focus on lytic polysaccharide monooxygenase, laccases, and various heme peroxidases involved in the processing of polysaccharides, lignins, rubbers, and some synthetic polymers. Special attention will be dedicated to the interaction between these enzymes and their substrate studied at different levels of theory, starting from classical molecular docking and molecular dynamics techniques up to techniques based on quantum chemistry.
format Online
Article
Text
id pubmed-10094197
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher MDPI
record_format MEDLINE/PubMed
spelling pubmed-100941972023-04-13 Recent Theoretical Insights into the Oxidative Degradation of Biopolymers and Plastics by Metalloenzymes † Rovaletti, Anna De Gioia, Luca Fantucci, Piercarlo Greco, Claudio Vertemara, Jacopo Zampella, Giuseppe Arrigoni, Federica Bertini, Luca Int J Mol Sci Review Molecular modeling techniques have become indispensable in many fields of molecular sciences in which the details related to mechanisms and reactivity need to be studied at an atomistic level. This review article provides a collection of computational modeling works on a topic of enormous interest and urgent relevance: the properties of metalloenzymes involved in the degradation and valorization of natural biopolymers and synthetic plastics on the basis of both circular biofuel production and bioremediation strategies. In particular, we will focus on lytic polysaccharide monooxygenase, laccases, and various heme peroxidases involved in the processing of polysaccharides, lignins, rubbers, and some synthetic polymers. Special attention will be dedicated to the interaction between these enzymes and their substrate studied at different levels of theory, starting from classical molecular docking and molecular dynamics techniques up to techniques based on quantum chemistry. MDPI 2023-03-28 /pmc/articles/PMC10094197/ /pubmed/37047341 http://dx.doi.org/10.3390/ijms24076368 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Review
Rovaletti, Anna
De Gioia, Luca
Fantucci, Piercarlo
Greco, Claudio
Vertemara, Jacopo
Zampella, Giuseppe
Arrigoni, Federica
Bertini, Luca
Recent Theoretical Insights into the Oxidative Degradation of Biopolymers and Plastics by Metalloenzymes †
title Recent Theoretical Insights into the Oxidative Degradation of Biopolymers and Plastics by Metalloenzymes †
title_full Recent Theoretical Insights into the Oxidative Degradation of Biopolymers and Plastics by Metalloenzymes †
title_fullStr Recent Theoretical Insights into the Oxidative Degradation of Biopolymers and Plastics by Metalloenzymes †
title_full_unstemmed Recent Theoretical Insights into the Oxidative Degradation of Biopolymers and Plastics by Metalloenzymes †
title_short Recent Theoretical Insights into the Oxidative Degradation of Biopolymers and Plastics by Metalloenzymes †
title_sort recent theoretical insights into the oxidative degradation of biopolymers and plastics by metalloenzymes †
topic Review
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10094197/
https://www.ncbi.nlm.nih.gov/pubmed/37047341
http://dx.doi.org/10.3390/ijms24076368
work_keys_str_mv AT rovalettianna recenttheoreticalinsightsintotheoxidativedegradationofbiopolymersandplasticsbymetalloenzymes
AT degioialuca recenttheoreticalinsightsintotheoxidativedegradationofbiopolymersandplasticsbymetalloenzymes
AT fantuccipiercarlo recenttheoreticalinsightsintotheoxidativedegradationofbiopolymersandplasticsbymetalloenzymes
AT grecoclaudio recenttheoreticalinsightsintotheoxidativedegradationofbiopolymersandplasticsbymetalloenzymes
AT vertemarajacopo recenttheoreticalinsightsintotheoxidativedegradationofbiopolymersandplasticsbymetalloenzymes
AT zampellagiuseppe recenttheoreticalinsightsintotheoxidativedegradationofbiopolymersandplasticsbymetalloenzymes
AT arrigonifederica recenttheoreticalinsightsintotheoxidativedegradationofbiopolymersandplasticsbymetalloenzymes
AT bertiniluca recenttheoreticalinsightsintotheoxidativedegradationofbiopolymersandplasticsbymetalloenzymes