Cargando…

Transcriptome-wide identification of single-stranded RNA binding proteins

RNA–protein interactions are precisely regulated by RNA secondary structures in various biological processes. Large-scale identification of proteins that interact with particular RNA structure is important to the RBPome. Herein, a kethoxal assisted single-stranded RNA interactome capture (KASRIC) st...

Descripción completa

Detalles Bibliográficos
Autores principales:	Zhao, Ruiqi, Fang, Xin, Mai, Zhibiao, Chen, Xi, Mo, Jing, Lin, Yingying, Xiao, Rui, Bao, Xichen, Weng, Xiaocheng, Zhou, Xiang
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	The Royal Society of Chemistry 2023
Materias:	Chemistry
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10094363/ https://www.ncbi.nlm.nih.gov/pubmed/37063799 http://dx.doi.org/10.1039/d3sc00957b

Ejemplares similares

Transcriptome-wide profiling of N(6)-methyladenosine via a selective chemical labeling method
por: Xie, Yalun, et al.
Publicado: (2022)

Deciphering the functional mechanism of zinc ions of PARP1 binding with single strand breaks and double strand breaks
por: Sun, Shuya, et al.
Publicado: (2022)

Transcriptome-wide profiling of A-to-I RNA editing by Slic-seq
por: Wei, Qi, et al.
Publicado: (2023)

Designed multi-stranded heme binding β-sheet peptides in membrane
por: D'Souza, Areetha, et al.
Publicado: (2016)

Sequence-dependent quenching of fluorescein fluorescence on single-stranded and double-stranded DNA
por: Lietard, Jory, et al.
Publicado: (2022)

Identification of single-stranded and double-stranded dna binding proteins based on protein structure
por: Wang, Wei, et al.
Publicado: (2014)

Correction: Designed multi-stranded heme binding β-sheet peptides in membrane
por: D'Souza, Areetha, et al.
Publicado: (2017)

One-pot fluorescent assay for sensitive detection of APOBEC3A activity
por: Wang, Bingyao, et al.
Publicado: (2021)

Keth-seq for transcriptome-wide RNA structure mapping
por: Weng, Xiaocheng, et al.
Publicado: (2020)

Transcriptome-wide identification and characterization of microRNAs in diverse phases of wood formation in Populus trichocarpa
por: Wang, Ruiqi, et al.
Publicado: (2021)

Gene specific-loci quantitative and single-base resolution analysis of 5-formylcytosine by compound-mediated polymerase chain reaction
por: Wang, Yafen, et al.
Publicado: (2018)

Intelligent demethylase-driven DNAzyme sensor for highly reliable metal-ion imaging in living cells
por: Hong, Chen, et al.
Publicado: (2021)

DENT-seq for genome-wide strand-specific identification of DNA single-strand break sites with single-nucleotide resolution
por: Elacqua, Joshua J., et al.
Publicado: (2021)

N1-Methyladenosine detection with CRISPR-Cas13a/C2c2
por: Chen, Yi, et al.
Publicado: (2019)

Characterization of single-stranded DNA-binding protein SsbB from Staphylococcus aureus: SsbB cannot stimulate PriA helicase
por: Chen, Kuan-Lin, et al.
Publicado: (2018)

Single-stranded DNA probe paired aptasensor with extra dye binding sites to enhance its fluorescence response in the presence of a target compound
por: Cho, Seo Won, et al.
Publicado: (2021)

Live-cell RNA imaging using the CRISPR-dCas13 system with modified sgRNAs appended with fluorescent RNA aptamers
por: Tang, Heng, et al.
Publicado: (2022)

Microsecond kinetics in model single- and double-stranded amylose polymers
por: Sattelle, Benedict M., et al.
Publicado: (2014)

A single strand: A simplified approach to DNA origami
por: Yang, Micah, et al.
Publicado: (2023)

Time course of estazolam in single-strand hair based on micro-segmental analysis after controlled oral administration
por: Xu, Duoqi, et al.
Publicado: (2022)

Identification of β-strand mediated protein–protein interaction inhibitors using ligand-directed fragment ligation
por: Hegedüs, Zsófia, et al.
Publicado: (2021)

Mechanistic studies on bleomycin-mediated DNA damage: multiple binding modes can result in double-stranded DNA cleavage
por: Chen, Jingyang, et al.
Publicado: (2008)

Acrylonitrile‐Mediated Nascent RNA Sequencing for Transcriptome‐Wide Profiling of Cellular RNA Dynamics
por: Chen, Yuqi, et al.
Publicado: (2020)

Ozonation enhancement of low cost double-stranded DNA binding dye based fluorescence measurement of total bacterial load in water
por: Choi, Jiwon, et al.
Publicado: (2021)

Fluorogenic labeling and single-base resolution analysis of 5-formylcytosine in DNA
por: Liu, Chaoxing, et al.
Publicado: (2017)

Single-Stranded DNA Binding Proteins and Their Identification Using Machine Learning-Based Approaches
por: Guo, Jun-Tao, et al.
Publicado: (2022)

Genome-wide identification and characterization of long non-coding RNAs responsive to Dickeya zeae in rice
por: Li, Wen Qi, et al.
Publicado: (2018)

Radiation-induced formation of purine lesions in single and double stranded DNA: revised quantification
por: Terzidis, Michael A., et al.
Publicado: (2015)

Coordinated Binding of Single-Stranded and Double-Stranded DNA by UvsX Recombinase
por: Maher, Robyn L., et al.
Publicado: (2013)

Comparison of stranded and non-stranded RNA-seq transcriptome profiling and investigation of gene overlap
por: Zhao, Shanrong, et al.
Publicado: (2015)

Transcriptome-Wide Identification and Characterization of the JAZ Gene Family in Mentha canadensis L.
por: Xu, Dong-Bei, et al.
Publicado: (2021)

Proximity hybridization triggered strand displacement and DNAzyme assisted strand recycling for ATP fluorescence detection in vitro and imaging in living cells
por: Gao, Fenglei, et al.
Publicado: (2018)

HU binds and folds single-stranded DNA
por: Kamashev, Dmitri, et al.
Publicado: (2008)

Development of double strand RNA mPEI nanoparticles and application in treating invasive breast cancer
por: Liu, Rui, et al.
Publicado: (2019)

A lithium-ion-active aerolysin nanopore for effectively trapping long single-stranded DNA
por: Hu, Zheng-Li, et al.
Publicado: (2018)

Interaction of single- and double-stranded DNA with multilayer MXene by fluorescence spectroscopy and molecular dynamics simulations
por: Manzanares-Palenzuela, C. Lorena, et al.
Publicado: (2019)

Selection and preliminary application of a single stranded DNA aptamer targeting colorectal cancer serum
por: Li, Kun, et al.
Publicado: (2019)

Optimization in Chemical Modification of Single-Stranded siRNA Encapsulated by Neutral Cytidinyl/Cationic Lipids
por: Li, Zheng, et al.
Publicado: (2022)

Exciton decay mechanism in DNA single strands: back-electron transfer and ultrafast base motions
por: Bauer, Benjamin, et al.
Publicado: (2022)

Light weight and flexible poly(ether ether ketone) based composite film with excellent thermal stability and mechanical properties for wide-band electromagnetic interference shielding
por: Na, Ruiqi, et al.
Publicado: (2018)

Cannot write session to /tmp/vufind_sessions/sess_lcai828hoaiqb7ooja50dmvib5