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Lanthanides as Calcium Mimetic Species in Calcium-Signaling/Buffering Proteins: The Effect of Lanthanide Type on the Ca(2+)/Ln(3+) Competition

Lanthanides, the 14 4f-block elements plus Lanthanum, have been extensively used to study the structure and biochemical properties of metalloproteins. The characteristics of lanthanides within the lanthanide series are similar, but not identical. The present research offers a systematic investigatio...

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Autores principales: Nikolova, Valya, Kircheva, Nikoleta, Dobrev, Stefan, Angelova, Silvia, Dudev, Todor
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10094714/
https://www.ncbi.nlm.nih.gov/pubmed/37047269
http://dx.doi.org/10.3390/ijms24076297
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author Nikolova, Valya
Kircheva, Nikoleta
Dobrev, Stefan
Angelova, Silvia
Dudev, Todor
author_facet Nikolova, Valya
Kircheva, Nikoleta
Dobrev, Stefan
Angelova, Silvia
Dudev, Todor
author_sort Nikolova, Valya
collection PubMed
description Lanthanides, the 14 4f-block elements plus Lanthanum, have been extensively used to study the structure and biochemical properties of metalloproteins. The characteristics of lanthanides within the lanthanide series are similar, but not identical. The present research offers a systematic investigation of the ability of the entire Ln(3+) series to substitute for Ca(2+) in biological systems. A well-calibrated DFT/PCM protocol is employed in studying the factors that control the metal selectivity in biological systems by modeling typical calcium signaling/buffering binding sites and elucidating the thermodynamic outcome of the competition between the “alien” La(3+)/Ln(3+) and “native” Ca(2+), and La(3+) − Ln(3+) within the lanthanide series. The calculations performed reveal that the major determinant of the Ca(2+)/Ln(3+) selectivity in calcium proteins is the net charge of the calcium binding pocket; the more negative the charge, the higher the competitiveness of the trivalent Ln(3+) with respect to its Ca(2+) contender. Solvent exposure of the binding site also influences the process; buried active centers with net charge of −4 or −3 are characterized by higher Ln(3+) over Ca(2+) selectivity, whereas it is the opposite for sites with overall charge of −1. Within the series, the competition between La(3+) and its fellow lanthanides is determined by the balance between two competing effects: electronic (favoring heavier lanthanides) and solvation (generally favoring the lighter lanthanides).
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spelling pubmed-100947142023-04-13 Lanthanides as Calcium Mimetic Species in Calcium-Signaling/Buffering Proteins: The Effect of Lanthanide Type on the Ca(2+)/Ln(3+) Competition Nikolova, Valya Kircheva, Nikoleta Dobrev, Stefan Angelova, Silvia Dudev, Todor Int J Mol Sci Article Lanthanides, the 14 4f-block elements plus Lanthanum, have been extensively used to study the structure and biochemical properties of metalloproteins. The characteristics of lanthanides within the lanthanide series are similar, but not identical. The present research offers a systematic investigation of the ability of the entire Ln(3+) series to substitute for Ca(2+) in biological systems. A well-calibrated DFT/PCM protocol is employed in studying the factors that control the metal selectivity in biological systems by modeling typical calcium signaling/buffering binding sites and elucidating the thermodynamic outcome of the competition between the “alien” La(3+)/Ln(3+) and “native” Ca(2+), and La(3+) − Ln(3+) within the lanthanide series. The calculations performed reveal that the major determinant of the Ca(2+)/Ln(3+) selectivity in calcium proteins is the net charge of the calcium binding pocket; the more negative the charge, the higher the competitiveness of the trivalent Ln(3+) with respect to its Ca(2+) contender. Solvent exposure of the binding site also influences the process; buried active centers with net charge of −4 or −3 are characterized by higher Ln(3+) over Ca(2+) selectivity, whereas it is the opposite for sites with overall charge of −1. Within the series, the competition between La(3+) and its fellow lanthanides is determined by the balance between two competing effects: electronic (favoring heavier lanthanides) and solvation (generally favoring the lighter lanthanides). MDPI 2023-03-27 /pmc/articles/PMC10094714/ /pubmed/37047269 http://dx.doi.org/10.3390/ijms24076297 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Nikolova, Valya
Kircheva, Nikoleta
Dobrev, Stefan
Angelova, Silvia
Dudev, Todor
Lanthanides as Calcium Mimetic Species in Calcium-Signaling/Buffering Proteins: The Effect of Lanthanide Type on the Ca(2+)/Ln(3+) Competition
title Lanthanides as Calcium Mimetic Species in Calcium-Signaling/Buffering Proteins: The Effect of Lanthanide Type on the Ca(2+)/Ln(3+) Competition
title_full Lanthanides as Calcium Mimetic Species in Calcium-Signaling/Buffering Proteins: The Effect of Lanthanide Type on the Ca(2+)/Ln(3+) Competition
title_fullStr Lanthanides as Calcium Mimetic Species in Calcium-Signaling/Buffering Proteins: The Effect of Lanthanide Type on the Ca(2+)/Ln(3+) Competition
title_full_unstemmed Lanthanides as Calcium Mimetic Species in Calcium-Signaling/Buffering Proteins: The Effect of Lanthanide Type on the Ca(2+)/Ln(3+) Competition
title_short Lanthanides as Calcium Mimetic Species in Calcium-Signaling/Buffering Proteins: The Effect of Lanthanide Type on the Ca(2+)/Ln(3+) Competition
title_sort lanthanides as calcium mimetic species in calcium-signaling/buffering proteins: the effect of lanthanide type on the ca(2+)/ln(3+) competition
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10094714/
https://www.ncbi.nlm.nih.gov/pubmed/37047269
http://dx.doi.org/10.3390/ijms24076297
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