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Crystal Chemistry of the Copper Oxalate Biomineral Moolooite: The First Single-Crystal X-ray Diffraction Studies and Thermal Behavior
Moolooite, Cu(C(2)O(4))·nH(2)O, is a typical biomineral which forms due to Cu-bearing minerals coming into contact with oxalic acid sources such as bird guano deposits or lichens, and no single crystals of moolooite of either natural or synthetic origin have been found yet. This paper reports, for t...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10094873/ https://www.ncbi.nlm.nih.gov/pubmed/37047759 http://dx.doi.org/10.3390/ijms24076786 |
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author | Kornyakov, Ilya V. Gurzhiy, Vladislav V. Kuz’mina, Mariya A. Krzhizhanovskaya, Maria G. Chukanov, Nikita V. Chislov, Mikhail V. Korneev, Anatolii V. Izatulina, Alina R. |
author_facet | Kornyakov, Ilya V. Gurzhiy, Vladislav V. Kuz’mina, Mariya A. Krzhizhanovskaya, Maria G. Chukanov, Nikita V. Chislov, Mikhail V. Korneev, Anatolii V. Izatulina, Alina R. |
author_sort | Kornyakov, Ilya V. |
collection | PubMed |
description | Moolooite, Cu(C(2)O(4))·nH(2)O, is a typical biomineral which forms due to Cu-bearing minerals coming into contact with oxalic acid sources such as bird guano deposits or lichens, and no single crystals of moolooite of either natural or synthetic origin have been found yet. This paper reports, for the first time, on the preparation of single crystals of a synthetic analog of the copper-oxalate biomineral moolooite, and on the refinement of its crystal structure from the single-crystal X-ray diffraction (SCXRD) data. Along with the structural model, the SCXRD experiment showed the significant contribution of diffuse scattering to the overall diffraction data, which comes from the nanostructural disorder caused by stacking faults of Cu oxalate chains as they lengthen. This type of disorder should result in the chains breaking, at which point the H(2)O molecules may be arranged. The amount of water in the studied samples did not exceed 0.15 H(2)O molecules per formula unit. Apparently, the mechanism of incorporation of H(2)O molecules governs the absence of good-quality single crystals in nature and a lack of them in synthetic experiments: the more H(2)O content in the structure, the stronger the disorder will be. A description of the crystal structure indicates that the ideal structure of the Cu oxalate biomineral moolooite should not contain H(2)O molecules and should be described by the Cu(C(2)O(4)) formula. However, it was shown that natural and synthetic moolooite crystals contain a significant portion of “structural” water, which cannot be ignored. Considering the substantially variable amount of water, which can be incorporated into the crystal structure, the formula Cu(C(2)O(4))·nH(2)O for moolooite is justified. |
format | Online Article Text |
id | pubmed-10094873 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-100948732023-04-13 Crystal Chemistry of the Copper Oxalate Biomineral Moolooite: The First Single-Crystal X-ray Diffraction Studies and Thermal Behavior Kornyakov, Ilya V. Gurzhiy, Vladislav V. Kuz’mina, Mariya A. Krzhizhanovskaya, Maria G. Chukanov, Nikita V. Chislov, Mikhail V. Korneev, Anatolii V. Izatulina, Alina R. Int J Mol Sci Article Moolooite, Cu(C(2)O(4))·nH(2)O, is a typical biomineral which forms due to Cu-bearing minerals coming into contact with oxalic acid sources such as bird guano deposits or lichens, and no single crystals of moolooite of either natural or synthetic origin have been found yet. This paper reports, for the first time, on the preparation of single crystals of a synthetic analog of the copper-oxalate biomineral moolooite, and on the refinement of its crystal structure from the single-crystal X-ray diffraction (SCXRD) data. Along with the structural model, the SCXRD experiment showed the significant contribution of diffuse scattering to the overall diffraction data, which comes from the nanostructural disorder caused by stacking faults of Cu oxalate chains as they lengthen. This type of disorder should result in the chains breaking, at which point the H(2)O molecules may be arranged. The amount of water in the studied samples did not exceed 0.15 H(2)O molecules per formula unit. Apparently, the mechanism of incorporation of H(2)O molecules governs the absence of good-quality single crystals in nature and a lack of them in synthetic experiments: the more H(2)O content in the structure, the stronger the disorder will be. A description of the crystal structure indicates that the ideal structure of the Cu oxalate biomineral moolooite should not contain H(2)O molecules and should be described by the Cu(C(2)O(4)) formula. However, it was shown that natural and synthetic moolooite crystals contain a significant portion of “structural” water, which cannot be ignored. Considering the substantially variable amount of water, which can be incorporated into the crystal structure, the formula Cu(C(2)O(4))·nH(2)O for moolooite is justified. MDPI 2023-04-05 /pmc/articles/PMC10094873/ /pubmed/37047759 http://dx.doi.org/10.3390/ijms24076786 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Kornyakov, Ilya V. Gurzhiy, Vladislav V. Kuz’mina, Mariya A. Krzhizhanovskaya, Maria G. Chukanov, Nikita V. Chislov, Mikhail V. Korneev, Anatolii V. Izatulina, Alina R. Crystal Chemistry of the Copper Oxalate Biomineral Moolooite: The First Single-Crystal X-ray Diffraction Studies and Thermal Behavior |
title | Crystal Chemistry of the Copper Oxalate Biomineral Moolooite: The First Single-Crystal X-ray Diffraction Studies and Thermal Behavior |
title_full | Crystal Chemistry of the Copper Oxalate Biomineral Moolooite: The First Single-Crystal X-ray Diffraction Studies and Thermal Behavior |
title_fullStr | Crystal Chemistry of the Copper Oxalate Biomineral Moolooite: The First Single-Crystal X-ray Diffraction Studies and Thermal Behavior |
title_full_unstemmed | Crystal Chemistry of the Copper Oxalate Biomineral Moolooite: The First Single-Crystal X-ray Diffraction Studies and Thermal Behavior |
title_short | Crystal Chemistry of the Copper Oxalate Biomineral Moolooite: The First Single-Crystal X-ray Diffraction Studies and Thermal Behavior |
title_sort | crystal chemistry of the copper oxalate biomineral moolooite: the first single-crystal x-ray diffraction studies and thermal behavior |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10094873/ https://www.ncbi.nlm.nih.gov/pubmed/37047759 http://dx.doi.org/10.3390/ijms24076786 |
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