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A Structural Approach to the Strength Evaluation of Linear Chalcogen Bonds
The experimental structural features of chalcogen bonding (ChB) interactions in over 34,000 linear fragments R–Ch⋯A (Ch = S, Se, Te; R = C, N, O, S, Se, Te; A = N, O, S, Se, Te, F, Cl, Br, I) were analyzed. The bond distances d(R–Ch) and the interaction distances d(Ch⋯A) were investigated, and the f...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10096081/ https://www.ncbi.nlm.nih.gov/pubmed/37049895 http://dx.doi.org/10.3390/molecules28073133 |
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author | Aragoni, Maria Carla Arca, Massimiliano Lippolis, Vito Pintus, Anna Torubaev, Yury Podda, Enrico |
author_facet | Aragoni, Maria Carla Arca, Massimiliano Lippolis, Vito Pintus, Anna Torubaev, Yury Podda, Enrico |
author_sort | Aragoni, Maria Carla |
collection | PubMed |
description | The experimental structural features of chalcogen bonding (ChB) interactions in over 34,000 linear fragments R–Ch⋯A (Ch = S, Se, Te; R = C, N, O, S, Se, Te; A = N, O, S, Se, Te, F, Cl, Br, I) were analyzed. The bond distances d(R–Ch) and the interaction distances d(Ch⋯A) were investigated, and the functions δ(R–Ch) and δ(Ch⋯A) were introduced to compare the structural data of R–Ch⋯A fragments involving different Ch atoms. The functions δ(R−Ch) and δ(Ch⋯A) were calculated by normalizing the differences between the relevant bond d(R–Ch) and ChB interaction d(Ch⋯A) distances with respect to the sum of the relevant covalent (r(cov)R + r(cov)Ch) and the van der Waals (vdW) radii (r(vdW)Ch + r(vdW)A), respectively. A systematic comparison is presented, highlighting the role of the chalcogen involved, the role of the R atoms covalently bonded to the Ch, and the role of the A species playing the role of chalcogen bond acceptor. Based on the results obtained, an innovative approach is proposed for the evaluation and categorization of the ChB strength based on structural data. |
format | Online Article Text |
id | pubmed-10096081 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-100960812023-04-13 A Structural Approach to the Strength Evaluation of Linear Chalcogen Bonds Aragoni, Maria Carla Arca, Massimiliano Lippolis, Vito Pintus, Anna Torubaev, Yury Podda, Enrico Molecules Article The experimental structural features of chalcogen bonding (ChB) interactions in over 34,000 linear fragments R–Ch⋯A (Ch = S, Se, Te; R = C, N, O, S, Se, Te; A = N, O, S, Se, Te, F, Cl, Br, I) were analyzed. The bond distances d(R–Ch) and the interaction distances d(Ch⋯A) were investigated, and the functions δ(R–Ch) and δ(Ch⋯A) were introduced to compare the structural data of R–Ch⋯A fragments involving different Ch atoms. The functions δ(R−Ch) and δ(Ch⋯A) were calculated by normalizing the differences between the relevant bond d(R–Ch) and ChB interaction d(Ch⋯A) distances with respect to the sum of the relevant covalent (r(cov)R + r(cov)Ch) and the van der Waals (vdW) radii (r(vdW)Ch + r(vdW)A), respectively. A systematic comparison is presented, highlighting the role of the chalcogen involved, the role of the R atoms covalently bonded to the Ch, and the role of the A species playing the role of chalcogen bond acceptor. Based on the results obtained, an innovative approach is proposed for the evaluation and categorization of the ChB strength based on structural data. MDPI 2023-03-31 /pmc/articles/PMC10096081/ /pubmed/37049895 http://dx.doi.org/10.3390/molecules28073133 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Aragoni, Maria Carla Arca, Massimiliano Lippolis, Vito Pintus, Anna Torubaev, Yury Podda, Enrico A Structural Approach to the Strength Evaluation of Linear Chalcogen Bonds |
title | A Structural Approach to the Strength Evaluation of Linear Chalcogen Bonds |
title_full | A Structural Approach to the Strength Evaluation of Linear Chalcogen Bonds |
title_fullStr | A Structural Approach to the Strength Evaluation of Linear Chalcogen Bonds |
title_full_unstemmed | A Structural Approach to the Strength Evaluation of Linear Chalcogen Bonds |
title_short | A Structural Approach to the Strength Evaluation of Linear Chalcogen Bonds |
title_sort | structural approach to the strength evaluation of linear chalcogen bonds |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10096081/ https://www.ncbi.nlm.nih.gov/pubmed/37049895 http://dx.doi.org/10.3390/molecules28073133 |
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