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A Structural Approach to the Strength Evaluation of Linear Chalcogen Bonds

The experimental structural features of chalcogen bonding (ChB) interactions in over 34,000 linear fragments R–Ch⋯A (Ch = S, Se, Te; R = C, N, O, S, Se, Te; A = N, O, S, Se, Te, F, Cl, Br, I) were analyzed. The bond distances d(R–Ch) and the interaction distances d(Ch⋯A) were investigated, and the f...

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Autores principales: Aragoni, Maria Carla, Arca, Massimiliano, Lippolis, Vito, Pintus, Anna, Torubaev, Yury, Podda, Enrico
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10096081/
https://www.ncbi.nlm.nih.gov/pubmed/37049895
http://dx.doi.org/10.3390/molecules28073133
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author Aragoni, Maria Carla
Arca, Massimiliano
Lippolis, Vito
Pintus, Anna
Torubaev, Yury
Podda, Enrico
author_facet Aragoni, Maria Carla
Arca, Massimiliano
Lippolis, Vito
Pintus, Anna
Torubaev, Yury
Podda, Enrico
author_sort Aragoni, Maria Carla
collection PubMed
description The experimental structural features of chalcogen bonding (ChB) interactions in over 34,000 linear fragments R–Ch⋯A (Ch = S, Se, Te; R = C, N, O, S, Se, Te; A = N, O, S, Se, Te, F, Cl, Br, I) were analyzed. The bond distances d(R–Ch) and the interaction distances d(Ch⋯A) were investigated, and the functions δ(R–Ch) and δ(Ch⋯A) were introduced to compare the structural data of R–Ch⋯A fragments involving different Ch atoms. The functions δ(R−Ch) and δ(Ch⋯A) were calculated by normalizing the differences between the relevant bond d(R–Ch) and ChB interaction d(Ch⋯A) distances with respect to the sum of the relevant covalent (r(cov)R + r(cov)Ch) and the van der Waals (vdW) radii (r(vdW)Ch + r(vdW)A), respectively. A systematic comparison is presented, highlighting the role of the chalcogen involved, the role of the R atoms covalently bonded to the Ch, and the role of the A species playing the role of chalcogen bond acceptor. Based on the results obtained, an innovative approach is proposed for the evaluation and categorization of the ChB strength based on structural data.
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spelling pubmed-100960812023-04-13 A Structural Approach to the Strength Evaluation of Linear Chalcogen Bonds Aragoni, Maria Carla Arca, Massimiliano Lippolis, Vito Pintus, Anna Torubaev, Yury Podda, Enrico Molecules Article The experimental structural features of chalcogen bonding (ChB) interactions in over 34,000 linear fragments R–Ch⋯A (Ch = S, Se, Te; R = C, N, O, S, Se, Te; A = N, O, S, Se, Te, F, Cl, Br, I) were analyzed. The bond distances d(R–Ch) and the interaction distances d(Ch⋯A) were investigated, and the functions δ(R–Ch) and δ(Ch⋯A) were introduced to compare the structural data of R–Ch⋯A fragments involving different Ch atoms. The functions δ(R−Ch) and δ(Ch⋯A) were calculated by normalizing the differences between the relevant bond d(R–Ch) and ChB interaction d(Ch⋯A) distances with respect to the sum of the relevant covalent (r(cov)R + r(cov)Ch) and the van der Waals (vdW) radii (r(vdW)Ch + r(vdW)A), respectively. A systematic comparison is presented, highlighting the role of the chalcogen involved, the role of the R atoms covalently bonded to the Ch, and the role of the A species playing the role of chalcogen bond acceptor. Based on the results obtained, an innovative approach is proposed for the evaluation and categorization of the ChB strength based on structural data. MDPI 2023-03-31 /pmc/articles/PMC10096081/ /pubmed/37049895 http://dx.doi.org/10.3390/molecules28073133 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Aragoni, Maria Carla
Arca, Massimiliano
Lippolis, Vito
Pintus, Anna
Torubaev, Yury
Podda, Enrico
A Structural Approach to the Strength Evaluation of Linear Chalcogen Bonds
title A Structural Approach to the Strength Evaluation of Linear Chalcogen Bonds
title_full A Structural Approach to the Strength Evaluation of Linear Chalcogen Bonds
title_fullStr A Structural Approach to the Strength Evaluation of Linear Chalcogen Bonds
title_full_unstemmed A Structural Approach to the Strength Evaluation of Linear Chalcogen Bonds
title_short A Structural Approach to the Strength Evaluation of Linear Chalcogen Bonds
title_sort structural approach to the strength evaluation of linear chalcogen bonds
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10096081/
https://www.ncbi.nlm.nih.gov/pubmed/37049895
http://dx.doi.org/10.3390/molecules28073133
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