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Genome-Wide Identification and Analysis of MYB Transcription Factor Family in Hibiscus hamabo

MYB transcription factors constitute one of the largest gene families in plants and play essential roles in the regulation of plant growth, responses to stress, and a wide variety of physiological and biochemical processes. In this study, 204 MYB proteins (HhMYBs) were identified in the Hibiscus ham...

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Detalles Bibliográficos
Autores principales: Liu, Dina, Gu, Chunsun, Fu, Zekai, Wang, Zhiquan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10096737/
https://www.ncbi.nlm.nih.gov/pubmed/37050056
http://dx.doi.org/10.3390/plants12071429
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author Liu, Dina
Gu, Chunsun
Fu, Zekai
Wang, Zhiquan
author_facet Liu, Dina
Gu, Chunsun
Fu, Zekai
Wang, Zhiquan
author_sort Liu, Dina
collection PubMed
description MYB transcription factors constitute one of the largest gene families in plants and play essential roles in the regulation of plant growth, responses to stress, and a wide variety of physiological and biochemical processes. In this study, 204 MYB proteins (HhMYBs) were identified in the Hibiscus hamabo Sieb. et Zucc (H. hamabo) genome and systematically analyzed based on their genomic sequence and transcriptomic data. The candidate HhMYB proteins and MYBs of Arabidopsis thaliana were divided into 28 subfamilies based on the analysis of their phylogenetic relationships and their motif patterns. Expression analysis using RNA-seq and quantitative real-time PCR (qRT-PCR) indicated that most HhMYBs are differentially regulated under drought and salt stresses. qRT-PCR analysis of seven selected HhMYBs suggested that the HhMYB family may have regulatory roles in the responses to stress and hormones. This study provides a framework for a more comprehensive analysis of the role of MYBs in the response to abiotic stress in H. hamabo.
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spelling pubmed-100967372023-04-13 Genome-Wide Identification and Analysis of MYB Transcription Factor Family in Hibiscus hamabo Liu, Dina Gu, Chunsun Fu, Zekai Wang, Zhiquan Plants (Basel) Article MYB transcription factors constitute one of the largest gene families in plants and play essential roles in the regulation of plant growth, responses to stress, and a wide variety of physiological and biochemical processes. In this study, 204 MYB proteins (HhMYBs) were identified in the Hibiscus hamabo Sieb. et Zucc (H. hamabo) genome and systematically analyzed based on their genomic sequence and transcriptomic data. The candidate HhMYB proteins and MYBs of Arabidopsis thaliana were divided into 28 subfamilies based on the analysis of their phylogenetic relationships and their motif patterns. Expression analysis using RNA-seq and quantitative real-time PCR (qRT-PCR) indicated that most HhMYBs are differentially regulated under drought and salt stresses. qRT-PCR analysis of seven selected HhMYBs suggested that the HhMYB family may have regulatory roles in the responses to stress and hormones. This study provides a framework for a more comprehensive analysis of the role of MYBs in the response to abiotic stress in H. hamabo. MDPI 2023-03-23 /pmc/articles/PMC10096737/ /pubmed/37050056 http://dx.doi.org/10.3390/plants12071429 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Liu, Dina
Gu, Chunsun
Fu, Zekai
Wang, Zhiquan
Genome-Wide Identification and Analysis of MYB Transcription Factor Family in Hibiscus hamabo
title Genome-Wide Identification and Analysis of MYB Transcription Factor Family in Hibiscus hamabo
title_full Genome-Wide Identification and Analysis of MYB Transcription Factor Family in Hibiscus hamabo
title_fullStr Genome-Wide Identification and Analysis of MYB Transcription Factor Family in Hibiscus hamabo
title_full_unstemmed Genome-Wide Identification and Analysis of MYB Transcription Factor Family in Hibiscus hamabo
title_short Genome-Wide Identification and Analysis of MYB Transcription Factor Family in Hibiscus hamabo
title_sort genome-wide identification and analysis of myb transcription factor family in hibiscus hamabo
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10096737/
https://www.ncbi.nlm.nih.gov/pubmed/37050056
http://dx.doi.org/10.3390/plants12071429
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