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Genome Size Variation across a Cypriot Fabeae Tribe Germplasm Collection

DNA content is an important trait linked to the evolutionary routes of taxa and often connected to speciation. In the present study, we studied C-values variation across the Cypriot Fabeae gene pool. Several hundred plants (Vicia spp., Lens spp., Pisum spp.) were sampled across Cyprus. Accurate esti...

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Autores principales: Charalambous, Iliana, Ioannou, Nektaria, Kyratzis, Angelos C., Kourtellarides, Dimitrios, Hagidimitriou, Marianna, Nikoloudakis, Nikolaos
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10096862/
https://www.ncbi.nlm.nih.gov/pubmed/37050095
http://dx.doi.org/10.3390/plants12071469
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author Charalambous, Iliana
Ioannou, Nektaria
Kyratzis, Angelos C.
Kourtellarides, Dimitrios
Hagidimitriou, Marianna
Nikoloudakis, Nikolaos
author_facet Charalambous, Iliana
Ioannou, Nektaria
Kyratzis, Angelos C.
Kourtellarides, Dimitrios
Hagidimitriou, Marianna
Nikoloudakis, Nikolaos
author_sort Charalambous, Iliana
collection PubMed
description DNA content is an important trait linked to the evolutionary routes of taxa and often connected to speciation. In the present study, we studied C-values variation across the Cypriot Fabeae gene pool. Several hundred plants (Vicia spp., Lens spp., Pisum spp.) were sampled across Cyprus. Accurate estimates were established by flow cytometry and propidium iodine staining for 155 discrete populations/accessions. A ten-fold variation was detected across lineages with 1C DNA content varying from 1.584 pg for V. cretica (ARI02420) to 13.983 pg for V. faba (ARI00187). In general, flow cytometry was precise for the characterization of species, even though there were instances of genome overlapping across taxa. Most analyses in the current work refer to species that have not been characterized before by flow cytometry (or any other DNA content estimation method). Still, a correlation to C-values previously reported in Kew Plant DNA C-values database was attempted. A high degree of correlation except for V. dalmatica was established. The evaluation of genome size trait in relation with the Fabeae phylogeny, revealed that Pisum and Lens genera were rather homogenous, but an astonishing fluctuation was shown for Vicia spp. Moreover, it was established that genome up- or down-scaling was not directly linked to speciation drivers. The genomic size measurements presented here could deliver extra quality control for the identification and characterization of taxa in germplasm collections, particularly in cases where species share morphological characters.
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spelling pubmed-100968622023-04-13 Genome Size Variation across a Cypriot Fabeae Tribe Germplasm Collection Charalambous, Iliana Ioannou, Nektaria Kyratzis, Angelos C. Kourtellarides, Dimitrios Hagidimitriou, Marianna Nikoloudakis, Nikolaos Plants (Basel) Article DNA content is an important trait linked to the evolutionary routes of taxa and often connected to speciation. In the present study, we studied C-values variation across the Cypriot Fabeae gene pool. Several hundred plants (Vicia spp., Lens spp., Pisum spp.) were sampled across Cyprus. Accurate estimates were established by flow cytometry and propidium iodine staining for 155 discrete populations/accessions. A ten-fold variation was detected across lineages with 1C DNA content varying from 1.584 pg for V. cretica (ARI02420) to 13.983 pg for V. faba (ARI00187). In general, flow cytometry was precise for the characterization of species, even though there were instances of genome overlapping across taxa. Most analyses in the current work refer to species that have not been characterized before by flow cytometry (or any other DNA content estimation method). Still, a correlation to C-values previously reported in Kew Plant DNA C-values database was attempted. A high degree of correlation except for V. dalmatica was established. The evaluation of genome size trait in relation with the Fabeae phylogeny, revealed that Pisum and Lens genera were rather homogenous, but an astonishing fluctuation was shown for Vicia spp. Moreover, it was established that genome up- or down-scaling was not directly linked to speciation drivers. The genomic size measurements presented here could deliver extra quality control for the identification and characterization of taxa in germplasm collections, particularly in cases where species share morphological characters. MDPI 2023-03-27 /pmc/articles/PMC10096862/ /pubmed/37050095 http://dx.doi.org/10.3390/plants12071469 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Charalambous, Iliana
Ioannou, Nektaria
Kyratzis, Angelos C.
Kourtellarides, Dimitrios
Hagidimitriou, Marianna
Nikoloudakis, Nikolaos
Genome Size Variation across a Cypriot Fabeae Tribe Germplasm Collection
title Genome Size Variation across a Cypriot Fabeae Tribe Germplasm Collection
title_full Genome Size Variation across a Cypriot Fabeae Tribe Germplasm Collection
title_fullStr Genome Size Variation across a Cypriot Fabeae Tribe Germplasm Collection
title_full_unstemmed Genome Size Variation across a Cypriot Fabeae Tribe Germplasm Collection
title_short Genome Size Variation across a Cypriot Fabeae Tribe Germplasm Collection
title_sort genome size variation across a cypriot fabeae tribe germplasm collection
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10096862/
https://www.ncbi.nlm.nih.gov/pubmed/37050095
http://dx.doi.org/10.3390/plants12071469
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