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Early Fruit Development Regulation-Related Genes Concordantly Expressed with TCP Transcription Factors in Tomato (Solanum lycopersicum)

The tomato (Solanum lycopersicum L.) is considered one of the most important vegetable crops globally, both agronomically and economically; however, its fruit development regulation network is still unclear. The transcription factors serve as master regulators, activating many genes and/or metabolic...

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Autores principales: Edris, Sherif, Abulfaraj, Aala A., Makki, Rania M., Abo-Aba, Salah, Algandaby, Mardi M., Sabir, Jamal, Jansen, Robert K., El Domyati, Fotouh M., Bahieldin, Ahmed
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10099719/
https://www.ncbi.nlm.nih.gov/pubmed/36975523
http://dx.doi.org/10.3390/cimb45030153
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author Edris, Sherif
Abulfaraj, Aala A.
Makki, Rania M.
Abo-Aba, Salah
Algandaby, Mardi M.
Sabir, Jamal
Jansen, Robert K.
El Domyati, Fotouh M.
Bahieldin, Ahmed
author_facet Edris, Sherif
Abulfaraj, Aala A.
Makki, Rania M.
Abo-Aba, Salah
Algandaby, Mardi M.
Sabir, Jamal
Jansen, Robert K.
El Domyati, Fotouh M.
Bahieldin, Ahmed
author_sort Edris, Sherif
collection PubMed
description The tomato (Solanum lycopersicum L.) is considered one of the most important vegetable crops globally, both agronomically and economically; however, its fruit development regulation network is still unclear. The transcription factors serve as master regulators, activating many genes and/or metabolic pathways throughout the entire plant life cycle. In this study, we identified the transcription factors that are coordinated with TCP gene family regulation in early fruit development by making use of the high-throughput sequencing of RNA (RNAseq) technique. A total of 23 TCP-encoding genes were found to be regulated at various stages during the growth of the fruit. The expression patterns of five TCPs were consistent with those of other transcription factors and genes. There are two unique subgroups of this larger family: class I and class II TCPs. Others were directly associated with the growth and/or ripening of fruit, while others were involved in the production of the hormone auxin. Moreover, it was discovered that TCP18 had an expression pattern that was similar to that of the ethylene-responsive transcription factor 4 (ERF4). Tomato fruit set and overall development are under the direction of a gene called auxin response factor 5 (ARF5). TCP15 revealed an expression that was in sync with this gene. This study provides insight into the potential processes that help in acquiring superior fruit qualities by accelerating fruit growth and ripening.
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spelling pubmed-100997192023-04-14 Early Fruit Development Regulation-Related Genes Concordantly Expressed with TCP Transcription Factors in Tomato (Solanum lycopersicum) Edris, Sherif Abulfaraj, Aala A. Makki, Rania M. Abo-Aba, Salah Algandaby, Mardi M. Sabir, Jamal Jansen, Robert K. El Domyati, Fotouh M. Bahieldin, Ahmed Curr Issues Mol Biol Article The tomato (Solanum lycopersicum L.) is considered one of the most important vegetable crops globally, both agronomically and economically; however, its fruit development regulation network is still unclear. The transcription factors serve as master regulators, activating many genes and/or metabolic pathways throughout the entire plant life cycle. In this study, we identified the transcription factors that are coordinated with TCP gene family regulation in early fruit development by making use of the high-throughput sequencing of RNA (RNAseq) technique. A total of 23 TCP-encoding genes were found to be regulated at various stages during the growth of the fruit. The expression patterns of five TCPs were consistent with those of other transcription factors and genes. There are two unique subgroups of this larger family: class I and class II TCPs. Others were directly associated with the growth and/or ripening of fruit, while others were involved in the production of the hormone auxin. Moreover, it was discovered that TCP18 had an expression pattern that was similar to that of the ethylene-responsive transcription factor 4 (ERF4). Tomato fruit set and overall development are under the direction of a gene called auxin response factor 5 (ARF5). TCP15 revealed an expression that was in sync with this gene. This study provides insight into the potential processes that help in acquiring superior fruit qualities by accelerating fruit growth and ripening. MDPI 2023-03-13 /pmc/articles/PMC10099719/ /pubmed/36975523 http://dx.doi.org/10.3390/cimb45030153 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Edris, Sherif
Abulfaraj, Aala A.
Makki, Rania M.
Abo-Aba, Salah
Algandaby, Mardi M.
Sabir, Jamal
Jansen, Robert K.
El Domyati, Fotouh M.
Bahieldin, Ahmed
Early Fruit Development Regulation-Related Genes Concordantly Expressed with TCP Transcription Factors in Tomato (Solanum lycopersicum)
title Early Fruit Development Regulation-Related Genes Concordantly Expressed with TCP Transcription Factors in Tomato (Solanum lycopersicum)
title_full Early Fruit Development Regulation-Related Genes Concordantly Expressed with TCP Transcription Factors in Tomato (Solanum lycopersicum)
title_fullStr Early Fruit Development Regulation-Related Genes Concordantly Expressed with TCP Transcription Factors in Tomato (Solanum lycopersicum)
title_full_unstemmed Early Fruit Development Regulation-Related Genes Concordantly Expressed with TCP Transcription Factors in Tomato (Solanum lycopersicum)
title_short Early Fruit Development Regulation-Related Genes Concordantly Expressed with TCP Transcription Factors in Tomato (Solanum lycopersicum)
title_sort early fruit development regulation-related genes concordantly expressed with tcp transcription factors in tomato (solanum lycopersicum)
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10099719/
https://www.ncbi.nlm.nih.gov/pubmed/36975523
http://dx.doi.org/10.3390/cimb45030153
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