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Genetic and physiological insights into the diazotrophic activity of a non‐cyanobacterial marine diazotroph

Nitrogen (N(2)) fixation, or diazotrophy, supports a large part of primary production in oceans. Culture‐independent approaches highlighted the presence in abundance of marine non‐cyanobacterial diazotrophs (NCD), but their ecophysiology remains elusive, mostly because of the low number of isolated...

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Autores principales: Joublin‐Delavat, Aurélie, Touahri, Katia, Crétin, Pauline, Morot, Amandine, Rodrigues, Sophie, Jesus, Bruno, Trigodet, Florian, Delavat, François
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley & Sons, Inc. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10099842/
https://www.ncbi.nlm.nih.gov/pubmed/36302093
http://dx.doi.org/10.1111/1462-2920.16261
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author Joublin‐Delavat, Aurélie
Touahri, Katia
Crétin, Pauline
Morot, Amandine
Rodrigues, Sophie
Jesus, Bruno
Trigodet, Florian
Delavat, François
author_facet Joublin‐Delavat, Aurélie
Touahri, Katia
Crétin, Pauline
Morot, Amandine
Rodrigues, Sophie
Jesus, Bruno
Trigodet, Florian
Delavat, François
author_sort Joublin‐Delavat, Aurélie
collection PubMed
description Nitrogen (N(2)) fixation, or diazotrophy, supports a large part of primary production in oceans. Culture‐independent approaches highlighted the presence in abundance of marine non‐cyanobacterial diazotrophs (NCD), but their ecophysiology remains elusive, mostly because of the low number of isolated NCD and because of the lack of available genetic tools for these isolates. Here, a dual genetic and functional approach allowed unveiling the ecophysiology of a marine NCD affiliated to the species Vibrio diazotrophicus. Physiological characterization of the first marine NCD mutant obtained so far was performed using a soft‐gellan assay, demonstrating that a ΔnifH mutant is not able to grow in nitrogen‐free media. Furthermore, we demonstrated that V. diazotrophicus produces a thick biofilm under diazotrophic conditions, suggesting biofilm production as an adaptive response of this NCD to cope with the inhibition of nitrogen fixation by molecular oxygen. Finally, the genomic signature of V. diazotrophicus is essentially absent from metagenomic data of Tara Ocean expeditions, despite having been isolated from various marine environments. We think that the genetically tractable V. diazotrophicus strain used in this study may serve as an ideal model to study the ecophysiology of these overlooked procaryotic group.
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spelling pubmed-100998422023-04-14 Genetic and physiological insights into the diazotrophic activity of a non‐cyanobacterial marine diazotroph Joublin‐Delavat, Aurélie Touahri, Katia Crétin, Pauline Morot, Amandine Rodrigues, Sophie Jesus, Bruno Trigodet, Florian Delavat, François Environ Microbiol Research Articles Nitrogen (N(2)) fixation, or diazotrophy, supports a large part of primary production in oceans. Culture‐independent approaches highlighted the presence in abundance of marine non‐cyanobacterial diazotrophs (NCD), but their ecophysiology remains elusive, mostly because of the low number of isolated NCD and because of the lack of available genetic tools for these isolates. Here, a dual genetic and functional approach allowed unveiling the ecophysiology of a marine NCD affiliated to the species Vibrio diazotrophicus. Physiological characterization of the first marine NCD mutant obtained so far was performed using a soft‐gellan assay, demonstrating that a ΔnifH mutant is not able to grow in nitrogen‐free media. Furthermore, we demonstrated that V. diazotrophicus produces a thick biofilm under diazotrophic conditions, suggesting biofilm production as an adaptive response of this NCD to cope with the inhibition of nitrogen fixation by molecular oxygen. Finally, the genomic signature of V. diazotrophicus is essentially absent from metagenomic data of Tara Ocean expeditions, despite having been isolated from various marine environments. We think that the genetically tractable V. diazotrophicus strain used in this study may serve as an ideal model to study the ecophysiology of these overlooked procaryotic group. John Wiley & Sons, Inc. 2022-11-08 2022-12 /pmc/articles/PMC10099842/ /pubmed/36302093 http://dx.doi.org/10.1111/1462-2920.16261 Text en © 2022 The Authors. Environmental Microbiology published by Applied Microbiology International and John Wiley & Sons Ltd. https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc-nd/4.0/ (https://creativecommons.org/licenses/by-nc-nd/4.0/) License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non‐commercial and no modifications or adaptations are made.
spellingShingle Research Articles
Joublin‐Delavat, Aurélie
Touahri, Katia
Crétin, Pauline
Morot, Amandine
Rodrigues, Sophie
Jesus, Bruno
Trigodet, Florian
Delavat, François
Genetic and physiological insights into the diazotrophic activity of a non‐cyanobacterial marine diazotroph
title Genetic and physiological insights into the diazotrophic activity of a non‐cyanobacterial marine diazotroph
title_full Genetic and physiological insights into the diazotrophic activity of a non‐cyanobacterial marine diazotroph
title_fullStr Genetic and physiological insights into the diazotrophic activity of a non‐cyanobacterial marine diazotroph
title_full_unstemmed Genetic and physiological insights into the diazotrophic activity of a non‐cyanobacterial marine diazotroph
title_short Genetic and physiological insights into the diazotrophic activity of a non‐cyanobacterial marine diazotroph
title_sort genetic and physiological insights into the diazotrophic activity of a non‐cyanobacterial marine diazotroph
topic Research Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10099842/
https://www.ncbi.nlm.nih.gov/pubmed/36302093
http://dx.doi.org/10.1111/1462-2920.16261
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