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Genetic and physiological insights into the diazotrophic activity of a non‐cyanobacterial marine diazotroph
Nitrogen (N(2)) fixation, or diazotrophy, supports a large part of primary production in oceans. Culture‐independent approaches highlighted the presence in abundance of marine non‐cyanobacterial diazotrophs (NCD), but their ecophysiology remains elusive, mostly because of the low number of isolated...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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John Wiley & Sons, Inc.
2022
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10099842/ https://www.ncbi.nlm.nih.gov/pubmed/36302093 http://dx.doi.org/10.1111/1462-2920.16261 |
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author | Joublin‐Delavat, Aurélie Touahri, Katia Crétin, Pauline Morot, Amandine Rodrigues, Sophie Jesus, Bruno Trigodet, Florian Delavat, François |
author_facet | Joublin‐Delavat, Aurélie Touahri, Katia Crétin, Pauline Morot, Amandine Rodrigues, Sophie Jesus, Bruno Trigodet, Florian Delavat, François |
author_sort | Joublin‐Delavat, Aurélie |
collection | PubMed |
description | Nitrogen (N(2)) fixation, or diazotrophy, supports a large part of primary production in oceans. Culture‐independent approaches highlighted the presence in abundance of marine non‐cyanobacterial diazotrophs (NCD), but their ecophysiology remains elusive, mostly because of the low number of isolated NCD and because of the lack of available genetic tools for these isolates. Here, a dual genetic and functional approach allowed unveiling the ecophysiology of a marine NCD affiliated to the species Vibrio diazotrophicus. Physiological characterization of the first marine NCD mutant obtained so far was performed using a soft‐gellan assay, demonstrating that a ΔnifH mutant is not able to grow in nitrogen‐free media. Furthermore, we demonstrated that V. diazotrophicus produces a thick biofilm under diazotrophic conditions, suggesting biofilm production as an adaptive response of this NCD to cope with the inhibition of nitrogen fixation by molecular oxygen. Finally, the genomic signature of V. diazotrophicus is essentially absent from metagenomic data of Tara Ocean expeditions, despite having been isolated from various marine environments. We think that the genetically tractable V. diazotrophicus strain used in this study may serve as an ideal model to study the ecophysiology of these overlooked procaryotic group. |
format | Online Article Text |
id | pubmed-10099842 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | John Wiley & Sons, Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-100998422023-04-14 Genetic and physiological insights into the diazotrophic activity of a non‐cyanobacterial marine diazotroph Joublin‐Delavat, Aurélie Touahri, Katia Crétin, Pauline Morot, Amandine Rodrigues, Sophie Jesus, Bruno Trigodet, Florian Delavat, François Environ Microbiol Research Articles Nitrogen (N(2)) fixation, or diazotrophy, supports a large part of primary production in oceans. Culture‐independent approaches highlighted the presence in abundance of marine non‐cyanobacterial diazotrophs (NCD), but their ecophysiology remains elusive, mostly because of the low number of isolated NCD and because of the lack of available genetic tools for these isolates. Here, a dual genetic and functional approach allowed unveiling the ecophysiology of a marine NCD affiliated to the species Vibrio diazotrophicus. Physiological characterization of the first marine NCD mutant obtained so far was performed using a soft‐gellan assay, demonstrating that a ΔnifH mutant is not able to grow in nitrogen‐free media. Furthermore, we demonstrated that V. diazotrophicus produces a thick biofilm under diazotrophic conditions, suggesting biofilm production as an adaptive response of this NCD to cope with the inhibition of nitrogen fixation by molecular oxygen. Finally, the genomic signature of V. diazotrophicus is essentially absent from metagenomic data of Tara Ocean expeditions, despite having been isolated from various marine environments. We think that the genetically tractable V. diazotrophicus strain used in this study may serve as an ideal model to study the ecophysiology of these overlooked procaryotic group. John Wiley & Sons, Inc. 2022-11-08 2022-12 /pmc/articles/PMC10099842/ /pubmed/36302093 http://dx.doi.org/10.1111/1462-2920.16261 Text en © 2022 The Authors. Environmental Microbiology published by Applied Microbiology International and John Wiley & Sons Ltd. https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc-nd/4.0/ (https://creativecommons.org/licenses/by-nc-nd/4.0/) License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non‐commercial and no modifications or adaptations are made. |
spellingShingle | Research Articles Joublin‐Delavat, Aurélie Touahri, Katia Crétin, Pauline Morot, Amandine Rodrigues, Sophie Jesus, Bruno Trigodet, Florian Delavat, François Genetic and physiological insights into the diazotrophic activity of a non‐cyanobacterial marine diazotroph |
title | Genetic and physiological insights into the diazotrophic activity of a non‐cyanobacterial marine diazotroph |
title_full | Genetic and physiological insights into the diazotrophic activity of a non‐cyanobacterial marine diazotroph |
title_fullStr | Genetic and physiological insights into the diazotrophic activity of a non‐cyanobacterial marine diazotroph |
title_full_unstemmed | Genetic and physiological insights into the diazotrophic activity of a non‐cyanobacterial marine diazotroph |
title_short | Genetic and physiological insights into the diazotrophic activity of a non‐cyanobacterial marine diazotroph |
title_sort | genetic and physiological insights into the diazotrophic activity of a non‐cyanobacterial marine diazotroph |
topic | Research Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10099842/ https://www.ncbi.nlm.nih.gov/pubmed/36302093 http://dx.doi.org/10.1111/1462-2920.16261 |
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