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Pan-cancer analysis reveals IGFL2 as a potential target for cancer prognosis and immunotherapy

Insulin-like growth factor like family member 2 (IGFL2) is a gene in the IGFL family, located on chromosome 19, whose role in cancer is unclear, and the aim of this study was to investigate the relevance of IGFL2 expression, prognosis, immunity, and mutation in pan-cancer. Obtaining information from...

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Autores principales: Wang, Yuqi, Yuan, Hongwei, Yue, Genquan, Zhao, Lingyan, Xia, Yuan, Zhang, Nan, Li, Hailing, Liu, Dongyang, Su, Yubo, Wang, Haisheng, Gao, Yumin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10101991/
https://www.ncbi.nlm.nih.gov/pubmed/37055418
http://dx.doi.org/10.1038/s41598-023-27602-7
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author Wang, Yuqi
Yuan, Hongwei
Yue, Genquan
Zhao, Lingyan
Xia, Yuan
Zhang, Nan
Li, Hailing
Liu, Dongyang
Su, Yubo
Wang, Haisheng
Gao, Yumin
author_facet Wang, Yuqi
Yuan, Hongwei
Yue, Genquan
Zhao, Lingyan
Xia, Yuan
Zhang, Nan
Li, Hailing
Liu, Dongyang
Su, Yubo
Wang, Haisheng
Gao, Yumin
author_sort Wang, Yuqi
collection PubMed
description Insulin-like growth factor like family member 2 (IGFL2) is a gene in the IGFL family, located on chromosome 19, whose role in cancer is unclear, and the aim of this study was to investigate the relevance of IGFL2 expression, prognosis, immunity, and mutation in pan-cancer. Obtaining information from The Cancer Genome Atlas and The Genotype-Tissue Expression Project (GTEx) databases for expression analysis and combining with The Gene Expression Profile Interaction Analysis database for prognostic aspects. Analysis of immune cell infiltration by TIMER and CIBERSORT algorithms. Calculation of correlation of immune-related genes with IGFL2 expression and tumor mutational burden and microsatellite instability. Mutations and DNA methylation were analyzed using the cBioPortal database and the UALCAN database, and functional enrichment was performed using Gene set enrichment analysis (GSEA). IGFL2 expression is significantly elevated in tumor tissue and high expression has a worse prognosis in most cancers. In immune correlation analysis, it was associated with most immune cells and immune-related genes. In most cancers, IGFL2 methylation is lower and the group with mutations in IGFL2 has a worse prognosis than the normal group. The GSEA analysis showed that IGFL2 was significantly enriched in signaling and metabolism. IGFL2 may be involved in the development of many types of cancer, influencing the course of cancer with different biological functions. It may also be a biomarker for tumor immunotherapy.
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spelling pubmed-101019912023-04-15 Pan-cancer analysis reveals IGFL2 as a potential target for cancer prognosis and immunotherapy Wang, Yuqi Yuan, Hongwei Yue, Genquan Zhao, Lingyan Xia, Yuan Zhang, Nan Li, Hailing Liu, Dongyang Su, Yubo Wang, Haisheng Gao, Yumin Sci Rep Article Insulin-like growth factor like family member 2 (IGFL2) is a gene in the IGFL family, located on chromosome 19, whose role in cancer is unclear, and the aim of this study was to investigate the relevance of IGFL2 expression, prognosis, immunity, and mutation in pan-cancer. Obtaining information from The Cancer Genome Atlas and The Genotype-Tissue Expression Project (GTEx) databases for expression analysis and combining with The Gene Expression Profile Interaction Analysis database for prognostic aspects. Analysis of immune cell infiltration by TIMER and CIBERSORT algorithms. Calculation of correlation of immune-related genes with IGFL2 expression and tumor mutational burden and microsatellite instability. Mutations and DNA methylation were analyzed using the cBioPortal database and the UALCAN database, and functional enrichment was performed using Gene set enrichment analysis (GSEA). IGFL2 expression is significantly elevated in tumor tissue and high expression has a worse prognosis in most cancers. In immune correlation analysis, it was associated with most immune cells and immune-related genes. In most cancers, IGFL2 methylation is lower and the group with mutations in IGFL2 has a worse prognosis than the normal group. The GSEA analysis showed that IGFL2 was significantly enriched in signaling and metabolism. IGFL2 may be involved in the development of many types of cancer, influencing the course of cancer with different biological functions. It may also be a biomarker for tumor immunotherapy. Nature Publishing Group UK 2023-04-13 /pmc/articles/PMC10101991/ /pubmed/37055418 http://dx.doi.org/10.1038/s41598-023-27602-7 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Wang, Yuqi
Yuan, Hongwei
Yue, Genquan
Zhao, Lingyan
Xia, Yuan
Zhang, Nan
Li, Hailing
Liu, Dongyang
Su, Yubo
Wang, Haisheng
Gao, Yumin
Pan-cancer analysis reveals IGFL2 as a potential target for cancer prognosis and immunotherapy
title Pan-cancer analysis reveals IGFL2 as a potential target for cancer prognosis and immunotherapy
title_full Pan-cancer analysis reveals IGFL2 as a potential target for cancer prognosis and immunotherapy
title_fullStr Pan-cancer analysis reveals IGFL2 as a potential target for cancer prognosis and immunotherapy
title_full_unstemmed Pan-cancer analysis reveals IGFL2 as a potential target for cancer prognosis and immunotherapy
title_short Pan-cancer analysis reveals IGFL2 as a potential target for cancer prognosis and immunotherapy
title_sort pan-cancer analysis reveals igfl2 as a potential target for cancer prognosis and immunotherapy
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10101991/
https://www.ncbi.nlm.nih.gov/pubmed/37055418
http://dx.doi.org/10.1038/s41598-023-27602-7
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