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Development and validation of a deep learning survival model for cervical adenocarcinoma patients

BACKGROUND: The aim was to develop a personalized survival prediction deep learning model for cervical adenocarcinoma patients and process personalized survival prediction. METHODS: A total of 2501 cervical adenocarcinoma patients from the surveillance, epidemiology and end results database and 220...

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Autores principales: Li, Ruowen, Qu, Wenjie, Liu, Qingqing, Tan, Yilin, Zhang, Wenjing, Hao, Yiping, Jiang, Nan, Mao, Zhonghao, Ye, Jinwen, Jiao, Jun, Gao, Qun, Cui, Baoxia, Dong, Taotao
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10103498/
https://www.ncbi.nlm.nih.gov/pubmed/37055729
http://dx.doi.org/10.1186/s12859-023-05239-7
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author Li, Ruowen
Qu, Wenjie
Liu, Qingqing
Tan, Yilin
Zhang, Wenjing
Hao, Yiping
Jiang, Nan
Mao, Zhonghao
Ye, Jinwen
Jiao, Jun
Gao, Qun
Cui, Baoxia
Dong, Taotao
author_facet Li, Ruowen
Qu, Wenjie
Liu, Qingqing
Tan, Yilin
Zhang, Wenjing
Hao, Yiping
Jiang, Nan
Mao, Zhonghao
Ye, Jinwen
Jiao, Jun
Gao, Qun
Cui, Baoxia
Dong, Taotao
author_sort Li, Ruowen
collection PubMed
description BACKGROUND: The aim was to develop a personalized survival prediction deep learning model for cervical adenocarcinoma patients and process personalized survival prediction. METHODS: A total of 2501 cervical adenocarcinoma patients from the surveillance, epidemiology and end results database and 220 patients from Qilu hospital were enrolled in this study. We created our deep learning (DL) model to manipulate the data and evaluated its performance against four other competitive models. We tried to demonstrate a new grouping system oriented by survival outcomes and process personalized survival prediction by using our DL model. RESULTS: The DL model reached 0.878 c-index and 0.09 Brier score in the test set, which was better than the other four models. In the external test set, our model achieved a 0.80 c-index and 0.13 Brier score. Thus, we developed prognosis-oriented risk grouping for patients according to risk scores computed by our DL model. Notable differences among groupings were observed. In addition, a personalized survival prediction system based on our risk-scoring grouping was developed. CONCLUSIONS: We developed a deep neural network model for cervical adenocarcinoma patients. The performance of this model proved to be superior to other models. The results of external validation supported the possibility that the model can be used in clinical work. Finally, our survival grouping and personalized prediction system provided more accurate prognostic information for patients than traditional FIGO stages. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12859-023-05239-7.
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spelling pubmed-101034982023-04-15 Development and validation of a deep learning survival model for cervical adenocarcinoma patients Li, Ruowen Qu, Wenjie Liu, Qingqing Tan, Yilin Zhang, Wenjing Hao, Yiping Jiang, Nan Mao, Zhonghao Ye, Jinwen Jiao, Jun Gao, Qun Cui, Baoxia Dong, Taotao BMC Bioinformatics Research BACKGROUND: The aim was to develop a personalized survival prediction deep learning model for cervical adenocarcinoma patients and process personalized survival prediction. METHODS: A total of 2501 cervical adenocarcinoma patients from the surveillance, epidemiology and end results database and 220 patients from Qilu hospital were enrolled in this study. We created our deep learning (DL) model to manipulate the data and evaluated its performance against four other competitive models. We tried to demonstrate a new grouping system oriented by survival outcomes and process personalized survival prediction by using our DL model. RESULTS: The DL model reached 0.878 c-index and 0.09 Brier score in the test set, which was better than the other four models. In the external test set, our model achieved a 0.80 c-index and 0.13 Brier score. Thus, we developed prognosis-oriented risk grouping for patients according to risk scores computed by our DL model. Notable differences among groupings were observed. In addition, a personalized survival prediction system based on our risk-scoring grouping was developed. CONCLUSIONS: We developed a deep neural network model for cervical adenocarcinoma patients. The performance of this model proved to be superior to other models. The results of external validation supported the possibility that the model can be used in clinical work. Finally, our survival grouping and personalized prediction system provided more accurate prognostic information for patients than traditional FIGO stages. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12859-023-05239-7. BioMed Central 2023-04-13 /pmc/articles/PMC10103498/ /pubmed/37055729 http://dx.doi.org/10.1186/s12859-023-05239-7 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Research
Li, Ruowen
Qu, Wenjie
Liu, Qingqing
Tan, Yilin
Zhang, Wenjing
Hao, Yiping
Jiang, Nan
Mao, Zhonghao
Ye, Jinwen
Jiao, Jun
Gao, Qun
Cui, Baoxia
Dong, Taotao
Development and validation of a deep learning survival model for cervical adenocarcinoma patients
title Development and validation of a deep learning survival model for cervical adenocarcinoma patients
title_full Development and validation of a deep learning survival model for cervical adenocarcinoma patients
title_fullStr Development and validation of a deep learning survival model for cervical adenocarcinoma patients
title_full_unstemmed Development and validation of a deep learning survival model for cervical adenocarcinoma patients
title_short Development and validation of a deep learning survival model for cervical adenocarcinoma patients
title_sort development and validation of a deep learning survival model for cervical adenocarcinoma patients
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10103498/
https://www.ncbi.nlm.nih.gov/pubmed/37055729
http://dx.doi.org/10.1186/s12859-023-05239-7
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