Cargando…

Analysis of genomic copy number variations through whole-genome scan in Chinese Qaidam cattle

Qaidam cattle (CDM) are indigenous breed inhabiting Northwest China. In the present study, we newly sequenced 20 Qaidam cattle to investigate the copy number variants (CNVs) based on the ARS-UMD1.2 reference genome. We generated the CNV region (CNVR) datasets to explore the genomic CNV diversity and...

Descripción completa

Detalles Bibliográficos
Autores principales:	Liu, Yangkai, Mu, Yanan, Wang, Wenxiang, Ahmed, Zulfiqar, Wei, Xudong, Lei, Chuzhao, Ma, Zhijie
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Frontiers Media S.A. 2023
Materias:	Veterinary Science
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10103646/ https://www.ncbi.nlm.nih.gov/pubmed/37065216 http://dx.doi.org/10.3389/fvets.2023.1148070

Ejemplares similares

Genomic characteristics of cattle copy number variations
por: Hou, Yali, et al.
Publicado: (2011)

Genome-Wide Detection of Copy Number Variations and Evaluation of Candidate Copy Number Polymorphism Genes Associated With Complex Traits of Pigs
por: Zhang, Chunlei, et al.
Publicado: (2022)

Whole genome sequencing of simmental cattle for SNP and CNV discovery
por: Sun, Ting, et al.
Publicado: (2023)

Plasmodium copy number variation scan: gene copy numbers evaluation in haploid genomes
por: Beghain, Johann, et al.
Publicado: (2016)

Assessing Genomic Diversity and Productivity Signatures in Dianzhong Cattle by Whole-Genome Scanning
por: Zhang, Xianfu, et al.
Publicado: (2021)

Evolutionary and Functional Features of Copy Number Variation in the Cattle Genome
por: Keel, Brittney N., et al.
Publicado: (2016)

Identification of copy number variations in the genome of Dairy Gir cattle
por: Braga, Larissa G., et al.
Publicado: (2023)

Whole Genome Scan and Selection Signatures for Climate Adaption in Yanbian Cattle
por: Shen, Jiafei, et al.
Publicado: (2020)

Copy Number Variation of UGT 2B Genes in Indian Families Using Whole Genome Scans
por: Veerappa, Avinash M., et al.
Publicado: (2016)

Comparative Enhancer Map of Cattle Muscle Genome Annotated by ATAC-Seq
por: Cao, Xiukai, et al.
Publicado: (2021)

Copy number variation of the CCDC39 gene is associated with growth traits in Chinese cattle
por: Hu, Linyong, et al.
Publicado: (2022)

Assessing Genomic Diversity and Selective Pressures in Bohai Black Cattle Using Whole-Genome Sequencing Data
por: Ma, Xiaohui, et al.
Publicado: (2022)

Assessing the Role of Ancestral Fragments and Selection Signatures by Whole-Genome Scanning in Dehong Humped Cattle at the China–Myanmar Border
por: Luo, Xiaoyu, et al.
Publicado: (2022)

Genomic predictions combining SNP markers and copy number variations in Nellore cattle
por: Hay, El Hamidi A., et al.
Publicado: (2018)

Genome Wide Scan to Identify Potential Genomic Regions Associated With Milk Protein and Minerals in Vrindavani Cattle
por: Singh, Akansha, et al.
Publicado: (2022)

Genomic population structure and prevalence of copy number variations in South African Nguni cattle
por: Wang, Magretha Diane, et al.
Publicado: (2015)

Copy number variation in the bovine genome
por: Fadista, João, et al.
Publicado: (2010)

Copy Number Variation in the Horse Genome
por: Ghosh, Sharmila, et al.
Publicado: (2014)

A Survey of Copy Number Variation in the Porcine Genome Detected From Whole-Genome Sequence
por: Keel, Brittney N., et al.
Publicado: (2019)

Genome-wide detection of copy number variation in American mink using whole-genome sequencing
por: Davoudi, Pourya, et al.
Publicado: (2022)

Effective normalization for copy number variation detection from whole genome sequencing
por: Janevski, Angel, et al.
Publicado: (2012)

The Association of the Copy Number Variation of the MLLT10 Gene with Growth Traits of Chinese Cattle
por: Yang, Peng, et al.
Publicado: (2020)

Genome-Wide Association Studies, Runs of Homozygosity Analysis, and Copy Number Variation Detection to Identify Reproduction-Related Genes in Bama Xiang Pigs
por: Mo, Jiayuan, et al.
Publicado: (2022)

Copy number variation of EIF4A2 loci related to phenotypic traits in Chinese cattle
por: Zhang, Zijing, et al.
Publicado: (2022)

Impact of Parental Bos taurus and Bos indicus Origins on Copy Number Variation in Traditional Chinese Cattle Breeds
por: Zhang, Liangzhi, et al.
Publicado: (2015)

Association study and expression analysis of CYP4A11 gene copy number variation in Chinese cattle
por: Yang, Mingjuan, et al.
Publicado: (2017)

Elusive Copy Number Variation in the Mouse Genome
por: Agam, Avigail, et al.
Publicado: (2010)

Genomic copy number variations in glaucomatous neurodegeneration
por: Mukhopadhyay, Arijit
Publicado: (2014)

Genomic copy number variation in Mus musculus
por: Locke, M Elizabeth O, et al.
Publicado: (2015)

Copy number variations in the genome of the Qatari population
por: Fakhro, Khalid A., et al.
Publicado: (2015)

Whole Genome Distribution and Ethnic Differentiation of Copy Number Variation in Caucasian and Asian Populations
por: Li, Jian, et al.
Publicado: (2009)

A Reassessment of Copy Number Variations in Congenital Heart Defects: Picturing the Whole Genome
por: Meerschaut, Ilse, et al.
Publicado: (2021)

Distribution of Copy Number Variation in SYT11 Gene and Its Association with Growth Conformation Traits in Chinese Cattle
por: Yang, Haiyan, et al.
Publicado: (2022)

Genome-wide analysis reveals differential selection involved with copy number variation in diverse Chinese Cattle
por: Yang, Liu, et al.
Publicado: (2017)

Identification of Copy Number Variation in Domestic Chicken Using Whole-Genome Sequencing Reveals Evidence of Selection in the Genome
por: Seol, Donghyeok, et al.
Publicado: (2019)

Identification of copy number variation in Tibetan sheep using whole genome resequencing reveals evidence of genomic selection
por: Shi, Huibin, et al.
Publicado: (2023)

A Comparison of Tools for Copy-Number Variation Detection in Germline Whole Exome and Whole Genome Sequencing Data
por: Gabrielaite, Migle, et al.
Publicado: (2021)

Copy Number Variations of Four Y-Linked Genes in Swamp Buffaloes
por: Sun, Ting, et al.
Publicado: (2019)

Identification of copy number variations and common deletion polymorphisms in cattle
por: Bae, Joon Seol, et al.
Publicado: (2010)

Population-genetic properties of differentiated copy number variations in cattle
por: Xu, Lingyang, et al.
Publicado: (2016)

Cannot write session to /tmp/vufind_sessions/sess_2ue1n6cectdgmd87ngqsga849c