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Harmonized diffusion MRI data and white matter measures from the Adolescent Brain Cognitive Development Study

The Adolescent Brain Cognitive Development (ABCD) study has collected data from over 10,000 children across 21 sites, providing valuable insights into adolescent brain development. However, site-specific scanner variability has made it challenging to use diffusion MRI (dMRI) data from this study. To...

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Autores principales: Cetin-Karayumak, Suheyla, Zhang, Fan, Billah, Tashrif, Zekelman, Leo, Makris, Nikos, Pieper, Steve, O’Donnell, Lauren J., Rathi, Yogesh
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Cold Spring Harbor Laboratory 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10104063/
https://www.ncbi.nlm.nih.gov/pubmed/37066186
http://dx.doi.org/10.1101/2023.04.04.535587
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author Cetin-Karayumak, Suheyla
Zhang, Fan
Billah, Tashrif
Zekelman, Leo
Makris, Nikos
Pieper, Steve
O’Donnell, Lauren J.
Rathi, Yogesh
author_facet Cetin-Karayumak, Suheyla
Zhang, Fan
Billah, Tashrif
Zekelman, Leo
Makris, Nikos
Pieper, Steve
O’Donnell, Lauren J.
Rathi, Yogesh
author_sort Cetin-Karayumak, Suheyla
collection PubMed
description The Adolescent Brain Cognitive Development (ABCD) study has collected data from over 10,000 children across 21 sites, providing valuable insights into adolescent brain development. However, site-specific scanner variability has made it challenging to use diffusion MRI (dMRI) data from this study. To address this, a database of harmonized and processed ABCD dMRI data has been created, comprising quality-controlled imaging data from 9345 subjects. This resource required significant computational effort, taking ~50,000 CPU hours to harmonize the data, perform white matter parcellation, and run whole brain tractography. The database includes harmonized dMRI data, 800 white matter clusters, 73 anatomically labeled white matter tracts both in full-resolution (for analysis) and low-resolution (for visualization), and 804 different dMRI-derived measures per subject. It is available via the NIMH Data Archive and offers tremendous potential for scientific discoveries in structural connectivity studies of neurodevelopment in children and adolescents. Additionally, several post-harmonization experiments were conducted to demonstrate the success of the harmonization process on the ABCD dataset.
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spelling pubmed-101040632023-04-15 Harmonized diffusion MRI data and white matter measures from the Adolescent Brain Cognitive Development Study Cetin-Karayumak, Suheyla Zhang, Fan Billah, Tashrif Zekelman, Leo Makris, Nikos Pieper, Steve O’Donnell, Lauren J. Rathi, Yogesh bioRxiv Article The Adolescent Brain Cognitive Development (ABCD) study has collected data from over 10,000 children across 21 sites, providing valuable insights into adolescent brain development. However, site-specific scanner variability has made it challenging to use diffusion MRI (dMRI) data from this study. To address this, a database of harmonized and processed ABCD dMRI data has been created, comprising quality-controlled imaging data from 9345 subjects. This resource required significant computational effort, taking ~50,000 CPU hours to harmonize the data, perform white matter parcellation, and run whole brain tractography. The database includes harmonized dMRI data, 800 white matter clusters, 73 anatomically labeled white matter tracts both in full-resolution (for analysis) and low-resolution (for visualization), and 804 different dMRI-derived measures per subject. It is available via the NIMH Data Archive and offers tremendous potential for scientific discoveries in structural connectivity studies of neurodevelopment in children and adolescents. Additionally, several post-harmonization experiments were conducted to demonstrate the success of the harmonization process on the ABCD dataset. Cold Spring Harbor Laboratory 2023-05-02 /pmc/articles/PMC10104063/ /pubmed/37066186 http://dx.doi.org/10.1101/2023.04.04.535587 Text en https://creativecommons.org/licenses/by-nc-nd/4.0/This work is licensed under a Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License (https://creativecommons.org/licenses/by-nc-nd/4.0/) , which allows reusers to copy and distribute the material in any medium or format in unadapted form only, for noncommercial purposes only, and only so long as attribution is given to the creator.
spellingShingle Article
Cetin-Karayumak, Suheyla
Zhang, Fan
Billah, Tashrif
Zekelman, Leo
Makris, Nikos
Pieper, Steve
O’Donnell, Lauren J.
Rathi, Yogesh
Harmonized diffusion MRI data and white matter measures from the Adolescent Brain Cognitive Development Study
title Harmonized diffusion MRI data and white matter measures from the Adolescent Brain Cognitive Development Study
title_full Harmonized diffusion MRI data and white matter measures from the Adolescent Brain Cognitive Development Study
title_fullStr Harmonized diffusion MRI data and white matter measures from the Adolescent Brain Cognitive Development Study
title_full_unstemmed Harmonized diffusion MRI data and white matter measures from the Adolescent Brain Cognitive Development Study
title_short Harmonized diffusion MRI data and white matter measures from the Adolescent Brain Cognitive Development Study
title_sort harmonized diffusion mri data and white matter measures from the adolescent brain cognitive development study
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10104063/
https://www.ncbi.nlm.nih.gov/pubmed/37066186
http://dx.doi.org/10.1101/2023.04.04.535587
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