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Harmonized diffusion MRI data and white matter measures from the Adolescent Brain Cognitive Development Study
The Adolescent Brain Cognitive Development (ABCD) study has collected data from over 10,000 children across 21 sites, providing valuable insights into adolescent brain development. However, site-specific scanner variability has made it challenging to use diffusion MRI (dMRI) data from this study. To...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Cold Spring Harbor Laboratory
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10104063/ https://www.ncbi.nlm.nih.gov/pubmed/37066186 http://dx.doi.org/10.1101/2023.04.04.535587 |
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author | Cetin-Karayumak, Suheyla Zhang, Fan Billah, Tashrif Zekelman, Leo Makris, Nikos Pieper, Steve O’Donnell, Lauren J. Rathi, Yogesh |
author_facet | Cetin-Karayumak, Suheyla Zhang, Fan Billah, Tashrif Zekelman, Leo Makris, Nikos Pieper, Steve O’Donnell, Lauren J. Rathi, Yogesh |
author_sort | Cetin-Karayumak, Suheyla |
collection | PubMed |
description | The Adolescent Brain Cognitive Development (ABCD) study has collected data from over 10,000 children across 21 sites, providing valuable insights into adolescent brain development. However, site-specific scanner variability has made it challenging to use diffusion MRI (dMRI) data from this study. To address this, a database of harmonized and processed ABCD dMRI data has been created, comprising quality-controlled imaging data from 9345 subjects. This resource required significant computational effort, taking ~50,000 CPU hours to harmonize the data, perform white matter parcellation, and run whole brain tractography. The database includes harmonized dMRI data, 800 white matter clusters, 73 anatomically labeled white matter tracts both in full-resolution (for analysis) and low-resolution (for visualization), and 804 different dMRI-derived measures per subject. It is available via the NIMH Data Archive and offers tremendous potential for scientific discoveries in structural connectivity studies of neurodevelopment in children and adolescents. Additionally, several post-harmonization experiments were conducted to demonstrate the success of the harmonization process on the ABCD dataset. |
format | Online Article Text |
id | pubmed-10104063 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Cold Spring Harbor Laboratory |
record_format | MEDLINE/PubMed |
spelling | pubmed-101040632023-04-15 Harmonized diffusion MRI data and white matter measures from the Adolescent Brain Cognitive Development Study Cetin-Karayumak, Suheyla Zhang, Fan Billah, Tashrif Zekelman, Leo Makris, Nikos Pieper, Steve O’Donnell, Lauren J. Rathi, Yogesh bioRxiv Article The Adolescent Brain Cognitive Development (ABCD) study has collected data from over 10,000 children across 21 sites, providing valuable insights into adolescent brain development. However, site-specific scanner variability has made it challenging to use diffusion MRI (dMRI) data from this study. To address this, a database of harmonized and processed ABCD dMRI data has been created, comprising quality-controlled imaging data from 9345 subjects. This resource required significant computational effort, taking ~50,000 CPU hours to harmonize the data, perform white matter parcellation, and run whole brain tractography. The database includes harmonized dMRI data, 800 white matter clusters, 73 anatomically labeled white matter tracts both in full-resolution (for analysis) and low-resolution (for visualization), and 804 different dMRI-derived measures per subject. It is available via the NIMH Data Archive and offers tremendous potential for scientific discoveries in structural connectivity studies of neurodevelopment in children and adolescents. Additionally, several post-harmonization experiments were conducted to demonstrate the success of the harmonization process on the ABCD dataset. Cold Spring Harbor Laboratory 2023-05-02 /pmc/articles/PMC10104063/ /pubmed/37066186 http://dx.doi.org/10.1101/2023.04.04.535587 Text en https://creativecommons.org/licenses/by-nc-nd/4.0/This work is licensed under a Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License (https://creativecommons.org/licenses/by-nc-nd/4.0/) , which allows reusers to copy and distribute the material in any medium or format in unadapted form only, for noncommercial purposes only, and only so long as attribution is given to the creator. |
spellingShingle | Article Cetin-Karayumak, Suheyla Zhang, Fan Billah, Tashrif Zekelman, Leo Makris, Nikos Pieper, Steve O’Donnell, Lauren J. Rathi, Yogesh Harmonized diffusion MRI data and white matter measures from the Adolescent Brain Cognitive Development Study |
title | Harmonized diffusion MRI data and white matter measures from the Adolescent Brain Cognitive Development Study |
title_full | Harmonized diffusion MRI data and white matter measures from the Adolescent Brain Cognitive Development Study |
title_fullStr | Harmonized diffusion MRI data and white matter measures from the Adolescent Brain Cognitive Development Study |
title_full_unstemmed | Harmonized diffusion MRI data and white matter measures from the Adolescent Brain Cognitive Development Study |
title_short | Harmonized diffusion MRI data and white matter measures from the Adolescent Brain Cognitive Development Study |
title_sort | harmonized diffusion mri data and white matter measures from the adolescent brain cognitive development study |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10104063/ https://www.ncbi.nlm.nih.gov/pubmed/37066186 http://dx.doi.org/10.1101/2023.04.04.535587 |
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