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Open science and data sharing in cognitive neuroscience with MouseBytes and MouseBytes+

Open access to rodent cognitive data has lagged behind the rapid generation of large open-access datasets in other areas of neuroscience, such as neuroimaging and genomics. One contributing factor has been the absence of uniform standardization in experiments and data output, an issue that has parti...

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Autores principales: Memar, Sara, Jiang, Eric, Prado, Vania F., Saksida, Lisa M., Bussey, Timothy J., Prado, Marco A. M.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10104860/
https://www.ncbi.nlm.nih.gov/pubmed/37059739
http://dx.doi.org/10.1038/s41597-023-02106-1
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author Memar, Sara
Jiang, Eric
Prado, Vania F.
Saksida, Lisa M.
Bussey, Timothy J.
Prado, Marco A. M.
author_facet Memar, Sara
Jiang, Eric
Prado, Vania F.
Saksida, Lisa M.
Bussey, Timothy J.
Prado, Marco A. M.
author_sort Memar, Sara
collection PubMed
description Open access to rodent cognitive data has lagged behind the rapid generation of large open-access datasets in other areas of neuroscience, such as neuroimaging and genomics. One contributing factor has been the absence of uniform standardization in experiments and data output, an issue that has particularly plagued studies in animal models. Touchscreen-automated cognitive testing of animal models allows standardized outputs that are compatible with open-access sharing. Touchscreen datasets can be combined with different neuro-technologies such as fiber photometry, miniscopes, optogenetics, and MRI to evaluate the relationship between neural activity and behavior. Here we describe a platform that allows deposition of these data into an open-access repository. This platform, called MouseBytes, is a web-based repository that enables researchers to store, share, visualize, and analyze cognitive data. Here we present the architecture, structure, and the essential infrastructure behind MouseBytes. In addition, we describe MouseBytes+, a database that allows data from complementary neuro-technologies such as imaging and photometry to be easily integrated with behavioral data in MouseBytes to support multi-modal behavioral analysis.
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spelling pubmed-101048602023-04-16 Open science and data sharing in cognitive neuroscience with MouseBytes and MouseBytes+ Memar, Sara Jiang, Eric Prado, Vania F. Saksida, Lisa M. Bussey, Timothy J. Prado, Marco A. M. Sci Data Article Open access to rodent cognitive data has lagged behind the rapid generation of large open-access datasets in other areas of neuroscience, such as neuroimaging and genomics. One contributing factor has been the absence of uniform standardization in experiments and data output, an issue that has particularly plagued studies in animal models. Touchscreen-automated cognitive testing of animal models allows standardized outputs that are compatible with open-access sharing. Touchscreen datasets can be combined with different neuro-technologies such as fiber photometry, miniscopes, optogenetics, and MRI to evaluate the relationship between neural activity and behavior. Here we describe a platform that allows deposition of these data into an open-access repository. This platform, called MouseBytes, is a web-based repository that enables researchers to store, share, visualize, and analyze cognitive data. Here we present the architecture, structure, and the essential infrastructure behind MouseBytes. In addition, we describe MouseBytes+, a database that allows data from complementary neuro-technologies such as imaging and photometry to be easily integrated with behavioral data in MouseBytes to support multi-modal behavioral analysis. Nature Publishing Group UK 2023-04-14 /pmc/articles/PMC10104860/ /pubmed/37059739 http://dx.doi.org/10.1038/s41597-023-02106-1 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Memar, Sara
Jiang, Eric
Prado, Vania F.
Saksida, Lisa M.
Bussey, Timothy J.
Prado, Marco A. M.
Open science and data sharing in cognitive neuroscience with MouseBytes and MouseBytes+
title Open science and data sharing in cognitive neuroscience with MouseBytes and MouseBytes+
title_full Open science and data sharing in cognitive neuroscience with MouseBytes and MouseBytes+
title_fullStr Open science and data sharing in cognitive neuroscience with MouseBytes and MouseBytes+
title_full_unstemmed Open science and data sharing in cognitive neuroscience with MouseBytes and MouseBytes+
title_short Open science and data sharing in cognitive neuroscience with MouseBytes and MouseBytes+
title_sort open science and data sharing in cognitive neuroscience with mousebytes and mousebytes+
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10104860/
https://www.ncbi.nlm.nih.gov/pubmed/37059739
http://dx.doi.org/10.1038/s41597-023-02106-1
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