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Segmentation of thyroid glands and nodules in ultrasound images using the improved U-Net architecture

BACKGROUND: Identifying thyroid nodules’ boundaries is crucial for making an accurate clinical assessment. However, manual segmentation is time-consuming. This paper utilized U-Net and its improved methods to automatically segment thyroid nodules and glands. METHODS: The 5822 ultrasound images used...

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Autores principales: Zheng, Tianlei, Qin, Hang, Cui, Yingying, Wang, Rong, Zhao, Weiguo, Zhang, Shijin, Geng, Shi, Zhao, Lei
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10105426/
https://www.ncbi.nlm.nih.gov/pubmed/37060061
http://dx.doi.org/10.1186/s12880-023-01011-8
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author Zheng, Tianlei
Qin, Hang
Cui, Yingying
Wang, Rong
Zhao, Weiguo
Zhang, Shijin
Geng, Shi
Zhao, Lei
author_facet Zheng, Tianlei
Qin, Hang
Cui, Yingying
Wang, Rong
Zhao, Weiguo
Zhang, Shijin
Geng, Shi
Zhao, Lei
author_sort Zheng, Tianlei
collection PubMed
description BACKGROUND: Identifying thyroid nodules’ boundaries is crucial for making an accurate clinical assessment. However, manual segmentation is time-consuming. This paper utilized U-Net and its improved methods to automatically segment thyroid nodules and glands. METHODS: The 5822 ultrasound images used in the experiment came from two centers, 4658 images were used as the training dataset, and 1164 images were used as the independent mixed test dataset finally. Based on U-Net, deformable-pyramid split-attention residual U-Net (DSRU-Net) by introducing ResNeSt block, atrous spatial pyramid pooling, and deformable convolution v3 was proposed. This method combined context information and extracts features of interest better, and had advantages in segmenting nodules and glands of different shapes and sizes. RESULTS: DSRU-Net obtained 85.8% mean Intersection over Union, 92.5% mean dice coefficient and 94.1% nodule dice coefficient, which were increased by 1.8%, 1.3% and 1.9% compared with U-Net. CONCLUSIONS: Our method is more capable of identifying and segmenting glands and nodules than the original method, as shown by the results of correlational studies.
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spelling pubmed-101054262023-04-16 Segmentation of thyroid glands and nodules in ultrasound images using the improved U-Net architecture Zheng, Tianlei Qin, Hang Cui, Yingying Wang, Rong Zhao, Weiguo Zhang, Shijin Geng, Shi Zhao, Lei BMC Med Imaging Research BACKGROUND: Identifying thyroid nodules’ boundaries is crucial for making an accurate clinical assessment. However, manual segmentation is time-consuming. This paper utilized U-Net and its improved methods to automatically segment thyroid nodules and glands. METHODS: The 5822 ultrasound images used in the experiment came from two centers, 4658 images were used as the training dataset, and 1164 images were used as the independent mixed test dataset finally. Based on U-Net, deformable-pyramid split-attention residual U-Net (DSRU-Net) by introducing ResNeSt block, atrous spatial pyramid pooling, and deformable convolution v3 was proposed. This method combined context information and extracts features of interest better, and had advantages in segmenting nodules and glands of different shapes and sizes. RESULTS: DSRU-Net obtained 85.8% mean Intersection over Union, 92.5% mean dice coefficient and 94.1% nodule dice coefficient, which were increased by 1.8%, 1.3% and 1.9% compared with U-Net. CONCLUSIONS: Our method is more capable of identifying and segmenting glands and nodules than the original method, as shown by the results of correlational studies. BioMed Central 2023-04-14 /pmc/articles/PMC10105426/ /pubmed/37060061 http://dx.doi.org/10.1186/s12880-023-01011-8 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Research
Zheng, Tianlei
Qin, Hang
Cui, Yingying
Wang, Rong
Zhao, Weiguo
Zhang, Shijin
Geng, Shi
Zhao, Lei
Segmentation of thyroid glands and nodules in ultrasound images using the improved U-Net architecture
title Segmentation of thyroid glands and nodules in ultrasound images using the improved U-Net architecture
title_full Segmentation of thyroid glands and nodules in ultrasound images using the improved U-Net architecture
title_fullStr Segmentation of thyroid glands and nodules in ultrasound images using the improved U-Net architecture
title_full_unstemmed Segmentation of thyroid glands and nodules in ultrasound images using the improved U-Net architecture
title_short Segmentation of thyroid glands and nodules in ultrasound images using the improved U-Net architecture
title_sort segmentation of thyroid glands and nodules in ultrasound images using the improved u-net architecture
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10105426/
https://www.ncbi.nlm.nih.gov/pubmed/37060061
http://dx.doi.org/10.1186/s12880-023-01011-8
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