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Physically informed machine-learning algorithms for the identification of two-dimensional atomic crystals

After graphene was first exfoliated in 2004, research worldwide has focused on discovering and exploiting its distinctive electronic, mechanical, and structural properties. Application of the efficacious methodology used to fabricate graphene, mechanical exfoliation followed by optical microscopy in...

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Autores principales: Zichi, Laura, Liu, Tianci, Drueke, Elizabeth, Zhao, Liuyan, Xu, Gongjun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10105744/
https://www.ncbi.nlm.nih.gov/pubmed/37061576
http://dx.doi.org/10.1038/s41598-023-33298-6
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author Zichi, Laura
Liu, Tianci
Drueke, Elizabeth
Zhao, Liuyan
Xu, Gongjun
author_facet Zichi, Laura
Liu, Tianci
Drueke, Elizabeth
Zhao, Liuyan
Xu, Gongjun
author_sort Zichi, Laura
collection PubMed
description After graphene was first exfoliated in 2004, research worldwide has focused on discovering and exploiting its distinctive electronic, mechanical, and structural properties. Application of the efficacious methodology used to fabricate graphene, mechanical exfoliation followed by optical microscopy inspection, to other analogous bulk materials has resulted in many more two-dimensional (2D) atomic crystals. Despite their fascinating physical properties, manual identification of 2D atomic crystals has the clear drawback of low-throughput and hence is impractical for any scale-up applications of 2D samples. To combat this, recent integration of high-performance machine-learning techniques, usually deep learning algorithms because of their impressive object recognition abilities, with optical microscopy have been used to accelerate and automate this traditional flake identification process. However, deep learning methods require immense datasets and rely on uninterpretable and complicated algorithms for predictions. Conversely, tree-based machine-learning algorithms represent highly transparent and accessible models. We investigate these tree-based algorithms, with features that mimic color contrast, for automating the manual inspection process of exfoliated 2D materials (e.g., MoSe(2)). We examine their performance in comparison to ResNet, a famous Convolutional Neural Network (CNN), in terms of accuracy and the physical nature of their decision-making process. We find that the decision trees, gradient boosted decision trees, and random forests utilize physical aspects of the images to successfully identify 2D atomic crystals without suffering from extreme overfitting and high training dataset demands. We also employ a post-hoc study that identifies the sub-regions CNNs rely on for classification and find that they regularly utilize physically insignificant image attributes when correctly identifying thin materials.
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spelling pubmed-101057442023-04-17 Physically informed machine-learning algorithms for the identification of two-dimensional atomic crystals Zichi, Laura Liu, Tianci Drueke, Elizabeth Zhao, Liuyan Xu, Gongjun Sci Rep Article After graphene was first exfoliated in 2004, research worldwide has focused on discovering and exploiting its distinctive electronic, mechanical, and structural properties. Application of the efficacious methodology used to fabricate graphene, mechanical exfoliation followed by optical microscopy inspection, to other analogous bulk materials has resulted in many more two-dimensional (2D) atomic crystals. Despite their fascinating physical properties, manual identification of 2D atomic crystals has the clear drawback of low-throughput and hence is impractical for any scale-up applications of 2D samples. To combat this, recent integration of high-performance machine-learning techniques, usually deep learning algorithms because of their impressive object recognition abilities, with optical microscopy have been used to accelerate and automate this traditional flake identification process. However, deep learning methods require immense datasets and rely on uninterpretable and complicated algorithms for predictions. Conversely, tree-based machine-learning algorithms represent highly transparent and accessible models. We investigate these tree-based algorithms, with features that mimic color contrast, for automating the manual inspection process of exfoliated 2D materials (e.g., MoSe(2)). We examine their performance in comparison to ResNet, a famous Convolutional Neural Network (CNN), in terms of accuracy and the physical nature of their decision-making process. We find that the decision trees, gradient boosted decision trees, and random forests utilize physical aspects of the images to successfully identify 2D atomic crystals without suffering from extreme overfitting and high training dataset demands. We also employ a post-hoc study that identifies the sub-regions CNNs rely on for classification and find that they regularly utilize physically insignificant image attributes when correctly identifying thin materials. Nature Publishing Group UK 2023-04-15 /pmc/articles/PMC10105744/ /pubmed/37061576 http://dx.doi.org/10.1038/s41598-023-33298-6 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Zichi, Laura
Liu, Tianci
Drueke, Elizabeth
Zhao, Liuyan
Xu, Gongjun
Physically informed machine-learning algorithms for the identification of two-dimensional atomic crystals
title Physically informed machine-learning algorithms for the identification of two-dimensional atomic crystals
title_full Physically informed machine-learning algorithms for the identification of two-dimensional atomic crystals
title_fullStr Physically informed machine-learning algorithms for the identification of two-dimensional atomic crystals
title_full_unstemmed Physically informed machine-learning algorithms for the identification of two-dimensional atomic crystals
title_short Physically informed machine-learning algorithms for the identification of two-dimensional atomic crystals
title_sort physically informed machine-learning algorithms for the identification of two-dimensional atomic crystals
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10105744/
https://www.ncbi.nlm.nih.gov/pubmed/37061576
http://dx.doi.org/10.1038/s41598-023-33298-6
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