The chromosome-level genome of Cherax quadricarinatus

Red claw crayfish (Cherax quadricarinatus) is an aquatic crustacean with considerable potential for the commercial culture and an ideal model for studying the mechanism of sex determination. To provide better genomic resources, we assembled a chromosome-level genome with a size of 5.26 Gb and contig...

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Autores principales: Chen, Honglin, Zhang, Rui, Liu, Feng, Shao, Changwei, Liu, Fangfang, Li, Weidong, Ren, Jindong, Niu, Baolong, Liu, Haipeng, Lou, Bao
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Data Descriptor
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10106460/
https://www.ncbi.nlm.nih.gov/pubmed/37062798
http://dx.doi.org/10.1038/s41597-023-02124-z
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author Chen, Honglin
Zhang, Rui
Liu, Feng
Shao, Changwei
Liu, Fangfang
Li, Weidong
Ren, Jindong
Niu, Baolong
Liu, Haipeng
Lou, Bao
author_facet Chen, Honglin
Zhang, Rui
Liu, Feng
Shao, Changwei
Liu, Fangfang
Li, Weidong
Ren, Jindong
Niu, Baolong
Liu, Haipeng
Lou, Bao
author_sort Chen, Honglin
collection PubMed
description Red claw crayfish (Cherax quadricarinatus) is an aquatic crustacean with considerable potential for the commercial culture and an ideal model for studying the mechanism of sex determination. To provide better genomic resources, we assembled a chromosome-level genome with a size of 5.26 Gb and contig N50 of 144.33 kb. Nearly 90% of sequences were anchored to 100 chromosomes, which represents the high-quality crustacean genome with the largest number of chromosomes ever reported. The genome contained 78.69% repeat sequences and 20,460 protein-coding genes, of which 82.40% were functionally annotated. This chromosome-scale genome would be a valuable reference for assemblies of other complex genomes and studies of evolution in crustaceans.
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spelling pubmed-101064602023-04-18 The chromosome-level genome of Cherax quadricarinatus Chen, Honglin Zhang, Rui Liu, Feng Shao, Changwei Liu, Fangfang Li, Weidong Ren, Jindong Niu, Baolong Liu, Haipeng Lou, Bao Sci Data Data Descriptor Red claw crayfish (Cherax quadricarinatus) is an aquatic crustacean with considerable potential for the commercial culture and an ideal model for studying the mechanism of sex determination. To provide better genomic resources, we assembled a chromosome-level genome with a size of 5.26 Gb and contig N50 of 144.33 kb. Nearly 90% of sequences were anchored to 100 chromosomes, which represents the high-quality crustacean genome with the largest number of chromosomes ever reported. The genome contained 78.69% repeat sequences and 20,460 protein-coding genes, of which 82.40% were functionally annotated. This chromosome-scale genome would be a valuable reference for assemblies of other complex genomes and studies of evolution in crustaceans. Nature Publishing Group UK 2023-04-17 /pmc/articles/PMC10106460/ /pubmed/37062798 http://dx.doi.org/10.1038/s41597-023-02124-z Text en © The Author(s) 2023, corrected publication 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Data Descriptor
Chen, Honglin
Zhang, Rui
Liu, Feng
Shao, Changwei
Liu, Fangfang
Li, Weidong
Ren, Jindong
Niu, Baolong
Liu, Haipeng
Lou, Bao
The chromosome-level genome of Cherax quadricarinatus
title The chromosome-level genome of Cherax quadricarinatus
title_full The chromosome-level genome of Cherax quadricarinatus
title_fullStr The chromosome-level genome of Cherax quadricarinatus
title_full_unstemmed The chromosome-level genome of Cherax quadricarinatus
title_short The chromosome-level genome of Cherax quadricarinatus
title_sort chromosome-level genome of cherax quadricarinatus
topic Data Descriptor
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10106460/
https://www.ncbi.nlm.nih.gov/pubmed/37062798
http://dx.doi.org/10.1038/s41597-023-02124-z
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